专利摘要:
Prostate-specific membrane antigen (psma) targeting specific trying proteins comprising a cd3 binding domain, a half-life extension domain and a psma binding domain are provided herein. pharmaceutical compositions thereof, as well as nucleic acids, recombinant expression vectors and host cells are also provided to produce such psma-specific spectral proteins. methods of using the specific psma-specific proteins disclosed in the prevention and / or treatment diseases, conditions and disorders are also disclosed.
公开号:BR112019010602A2
申请号:R112019010602
申请日:2017-11-22
公开日:2019-12-17
发明作者:D Lemon Bryan;Wesche Holger;Guenot Jeanmarie;Baeuerle Patrick;Seto Pui;J Austin Richard;B Dubridge Robert
申请人:Harpoon Therapeutics Inc;
IPC主号:
专利说明:

TRIESPECIFIC PROTEINS GOING TO PSMA AND METHODS OF USE
CROSSED REFERENCE [001] This application claims the benefit of US Provisional Application No. 62 / 426,069, filed on November 23, 2016 and 62 / 426,077, filed on November 23, 2016, which are incorporated herein by reference to the present in its wholeness.
SEQUENCE LISTING [002] The present application contains a sequence listing that has been submitted electronically in ASCII format and is incorporated here by reference in its entirety. The ASCII copy, created on November 22, 2017, is called 47517708_601_SL.txt and is 150,911 bytes in size.
BACKGROUND OF THE INVENTION [003] The selective destruction of an individual cell or a specific cell type is often desirable in a variety of clinical settings. For example, it is a primary goal of cancer therapy to specifically destroy tumor cells, leaving healthy cells and tissues intact and undamaged. One of these methods is to induce an immune response against the tumor, to cause immune effector cells, such as natural killer cells (NK) or cytotoxic T lymphocytes (CTLs), to attack and destroy tumor cells.
SUMMARY OF THE INVENTION [004] Here are provided specific antigen-binding proteins, their pharmaceutical compositions, such as nucleic acids, recombinant expression vectors and host cells to produce such proteins are provided herein.
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2/76 antigen binding specifics, and methods of use for the treatment of diseases, disorders or conditions. In one aspect, described herein, the specific proteins targeting the prostate specific membrane antigen (PSMA), wherein said proteins comprise (a) a first domain (A) that specifically binds to human CD3; (b) a second domain (B) which is a half-life extension domain; and (c) a third domain (C) that specifically binds to PSMA, where the domains are linked in the order H 2 N- (A) - (C) - (B) -COOH, H 2 N- (B) - (A) - (C) -COOH, H 2 N- (C) - (B) - (A) -COOH, or by the ligands LI and L2. In some embodiments, the first domain comprises a variable light chain and a variable heavy chain, each of which is capable of specifically binding to human CD3. In some embodiments, the first domain comprises one or more sequences selected from the group consisting of SEQ ID NO: 1-88. In some modalities, the first domain is humanized or human. In some embodiments, the first domain has a KD binding of 150 nM or less to CD3 in cells expressing CD3. In some embodiments, the second domain binds to human serum albumin. In some embodiments, the second domain comprises a scFv, a variable heavy domain (VH), a light variable domain (VL), a peptide, a linker or a small molecule. In some embodiments, the second domain comprises one or more sequences selected from the group consisting of SEQ ID NOs: 89-112. In some embodiments, the third domain comprises a scFv, a VH domain, a VL domain, a non-Ig domain, a ligand, a knottin or a small molecular unit that specifically binds to PSMA. In some
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3/76 modalities, the third domain comprises one or more sequences selected from the group consisting of SEQ ID NOs: 113-140.
[005] In some embodiments, the LI and L2 ligands are each independently selected from ((GS) n (SEQ ID NO: 153), (GGS) n (SEQ ID NO: 154), (GGGS) n (SEQ ID NO: 155), (GGSG) n (SEQ ID NO: 156), (GGSGG) n (SEQ ID NO: 157), or (GGGGS) n (SEQ ID NO: 158), where n is 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10. In some embodiments, the LI and L2 ligands are each independently (GGGGS) 4 (SEQ ID NO: 159) or (GGGGS) 3 (SEQ ID NO: 160). In some modalities, the domains are linked in the order H 2 N- (A) - (C) - (B) -COOH. In some modalities, the domains are linked in the order H 2 N (B) - (C ) - (A) -COOH.
[006] In some embodiments, the protein is less than about 80 kDa. In some embodiments, the protein is about 50 to about 75 kDa. In some embodiments, the protein is less than about 60 kDa. In some embodiments, the protein has a half-life of at least about 50 hours. In some embodiments, the protein has a half-life of at least about 100 hours. In some embodiments, the protein increased tissue penetration compared to an IgG for the same PSMA.
[007] In some embodiments, the protein comprises a sequence selected from the group consisting of SEQ ID NO: 140-152.
[008] In another aspect, a pharmaceutical composition is provided here comprising (i) the triespecific protein targeting PSMA according to any of the above modalities and (ii) a pharmaceutically carrier
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4/76 acceptable.
[009] Methods of treating an individual in need of cancer treatment are also provided here, the method comprising administering an effective amount of the pharmaceutical composition or specific proteins targeting the PSMA in accordance with any of the above modalities. In some modalities, the cancer is prostate cancer or kidney cancer.
[0010] One embodiment provides a specific protein targeting PSMA, wherein said protein comprises (a) a first domain (A) that specifically binds to human CD3; (b) a second domain (B) which is a half-life extension domain; and (c) a third domain (C) that specifically binds to PSMA, wherein the second domain comprises one or more sequences selected from the group consisting of SEQ ID NOs: 113-140. In some embodiments, the domains are linked in the order H 2 N (A) - (C) - (B) -COOH, H 2 N- (B) - (A) - (C) -COOH, H 2 N- ( C) - (B) - (A) COOH, or by the ligands LI and L2. In some embodiments, the first domain comprises one or more strings selected from the group consisting of SEQ ID NO: 188. In some embodiments, the second domain comprises one or more sequences selected from the group consisting of SEQ ID NO: 89-112.
[0011] One modality provides a specific tries protein targeting PSMA, wherein said protein comprises a sequence selected from the group consisting of SEQ ID NO: 140-152. In some embodiments, said protein comprises a sequence selected from the group consisting of SEQ ID NO:
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150-152.
[0012] One embodiment provides a trypecific protein targeting membrane-specific prostatic antigen (PSMA), wherein said protein comprises (a) a first domain (A) that specifically binds to human CD3; (b) a second domain (B) which is a half-life extension domain; and (c) a third domain (C) that specifically binds to PSMA, where the domains are linked in the order H2N- (C) - (B) - (A) -COOH or via LI and L2 ligands, and wherein the third domain comprises one or more sequences selected from the group consisting of SEQ ID NO: 113-140.
[0013] One embodiment provides a triespecific protein targeting PSMA, wherein said protein comprises (a) a first domain (A) that specifically binds to human CD3; (b) a second domain (B) which is a half-life extension domain; and (c) a third domain (C) that specifically binds to PSMA, where the domains are linked in the order H2N- (C) - (B) - (A) -COOH or via LI and L2 ligands, and wherein the first domain comprises one or more sequences selected from the group consisting of SEQ ID NO: 1-88.
[0014] One embodiment provides a method of treating prostate cancer, the method comprising an effective amount of a trypecific protein targeting PSMA, wherein said protein comprises (a) a first domain (A) that specifically binds to CD3 human; (b) a second domain (B) which is a half-life extension domain; and (c) a third domain (C) that specifically binds to PSMA, where the domains are linked in the order H2N- (C) - (B) - (A)
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COOH or via LI and L2 linkers, and in which third domain comprises one or more sequences selected from the group consisting of SEQ ID NO: 113-140.
[0015] One modality provides a method of treating prostate cancer, the method comprising an effective amount of a specific specific protein targeting PSMA, wherein said protein comprises (a) a first domain (A) that specifically binds to CD3 human; (b) a second domain (B) which is a half-life extension domain; and (c) a third domain (C) that specifically binds to PSMA, where the domains are linked in the order H2N- (C) - (B) - (A) COOH or through LI and L2 ligands, and in that the first domain comprises one or more sequences selected from the group consisting of SEQ ID NO: 1-88.
INCORPORATION BY REFERENCE [0016] All publications, patents and patent applications mentioned in this report are hereby incorporated by reference to the same extent as if each individual publication, patent or patent application was specifically and individually indicated to be incorporated by reference here.
BRIEF DESCRIPTION OF THE DRAWINGS [0017] The innovative characteristics of the invention are established with particularity in the appended claims. A better understanding of the characteristics and advantages of the present invention will be obtained by reference to the following detailed description which presents illustrative modalities, in which the principles of the invention are used, and the accompanying drawings of which:
[0018] Figure 1 is a schematic representation of a
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Ί / Ί5 triespecific antigen-binding protein targeting PMSA, wherein the protein has a constant central element comprising an anti-CD3e single-chain variable fragment (scFv) and an anti-HSA variable heavy chain region; and a PMSA binding domain which can be a VH, scFv, a non-Ig binder or ligand.
[0019] Figures 2A — B compare the ability of specific proteins targeting PSMA (TriTAC molecules targeting PSMA) with different affinities for CD3 to induce T cells to kill human prostate cancer cells. Figure 2A shows death by different TriTAC molecules targeting PMSA in the LNCaP prostate cancer model. Figure 2B shows the death by different TriTAC molecules targeting PMSA in the 22Rvl prostate cancer model. Figure 2C shows EC50 values for TriTAC targeting PMSA in LNCaP and models of prostate cancer and 22Rvl.
[0020] Figure 3 shows the serum concentration of TriTAC C236 targeting PSMA in Cinomolgos monkeys after i.v. administration (100 pg / kg) for three weeks.
[0021] Figure 4 shows the serum concentration of TriTAC molecules targeting PSMA with different CD3 affinities in Cinomolgos monkeys after i.v. administration (100 pg / kg) for three weeks.
[0022] Figures 5A-C show the ability of TriTAC molecules targeting PSMA with different affinities for PSMA to induce T cells to kill the human prostate cancer cell line LNCaP. Figure 5A shows the experiment performed in the absence of human serum albumin with a BiTE targeting PSMA as a positive control.
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Figure 5B shows the experiment performed in the presence of human serum albumin with a BiTE targeting PSMA as a positive control. Figure 5C shows EC50 values for TriTAC targeting PMSA in the presence or absence of HSA with a BiTE targeting PSMA as a positive control in LNCaP prostate cancer models.
[0023] Figure 6 demonstrates the ability of TriTAC molecules targeting PSMA to inhibit tumor growth of human prostate cancer cells in a mouse xenograft experiment.
[0024] Figures 7A — D illustrate the specificity of the TriTAC molecules in cell death assays with target cell lines that express or not the target protein. Figure 7A shows the expression of EGFR and PSMA in LNCaP, KMS12BM and OVCAR8 cell lines. Figure 7B shows the death of LNCaP tumor cells by PSMA, EGFR and negative control TriTACs. Figure 7C shows the death of KMS12BM tumor cells by PSMA, EGFR and negative control TriTACs. Figure 7D shows the death of OVCAR8 cells by PSMA, EGFR and negative control TriTACs.
[0025] Figures 8A — D represent the impact of pre-incubation at 37 ° C and the freeze / thaw cycles on TriTAC activity. Figure 8A shows the activity of PSMA TriTAC C235 after pre-incubation at 37 ° C or freeze / thaw cycles. Figure 8B shows the activity of PSMA TriTAC C359 after pre-incubation at 37 ° C or freeze / thaw cycles. Figure 8C shows the activity of PSMA TriTAC C360 after pre-incubation at 37 ° C or freeze / thaw cycles. Figure 8D shows the activity of PSMA TriTAC C361 after pre-incubation at 37 ° C or
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9/76 freeze / thaw cycles.
[0026] Figures 9A-B describe the activity of a TriTAC molecule targeting PSMA of this disclosure in the redirected T cell death in T cell dependent cell cytotoxicity (TDCC) assays. Figure 9A shows the impact of the TriTAC molecule targeting PSMA in the redirection of peripheral blood mononuclear cells (PBMCs) from cynomolgus monkey donor G322, to kill LNCaP cells. Figure 9B shows the impact of the TriTAC molecule targeting PSMA in the redirection of cynomolgous PBMCs, from the donor cynomolgus monkey D173, to kill MDAPCa2b cells.
[0027] Figure 10 represents the impact of a TriTAC molecule directing to PSMA this disclosure on the expression of CD25 and CD69 T cell activation markers.
[0028] Figure 11 represents the ability of a TriTAC olecule targeting PSMA from this disclosure to stimulate proliferation of T cells in the presence of target cells expressing PSMA.
[0029] Figures 12A-B depict the death of redirected T cells from LnCaP cells by TriTAC molecules targeting PSMA. Figure 12A shows the death of redirected T cells from LnCaP cells by PSMA PH1T TriTAC molecules (SEQ ID No: 150) and PSMA PH1 TriTAC (SEQ ID NO: 151). Figure 12B shows the death of redirected T cells from LnCaP cells by PSMA Z2 TriTAC (SEQ ID NO: 152).
DETAILED DESCRIPTION OF THE INVENTION [0030] Tried-specific proteins that target prostate specific membrane antigen (PSMA), their pharmaceutical compositions, as well as acids are described here
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10/76 nucleic acids, recombinant expression vectors and host cells to produce such proteins. Methods of using the specific proteins targeting PSMA revealed in the prevention and / or treatment of diseases, conditions and disorders are also provided. The specific proteins targeting PSMA are able to specifically bind PSMA as well as CD3 and have a half-life extension domain, such as a domain that binds to human serum albumin (HSA). Figure 1 represents a non-limiting example of a specific antigen-binding protein.
[0031] In one aspect, the specific proteins targeting PSMA comprise a domain (A) that specifically binds to CD3, a domain (B) that specifically binds to human serum albumin (HSA) and a domain (C) that binds specifically to PSMA. The three domains in the specific proteins targeting PSMA are organized in any order. Thus, it is contemplated that the domain order of the specific proteins targeting PSMA are:
H 2 N- (A) - (B) - (C) -COOH, H 2 N- (A) - (C) - (B) -COOH, H 2 N- (B) - (A) - (C ) -COOH, H 2 N- (B) - (C) - (A) -COOH, H 2 N- (C) - (B) - (A) -COOH, or H 2 N- (C) - ( A) - (B) -COOH.
[0032] In some embodiments, the specific proteins targeting PSMA have an H 2 N- (A) - (B) - (C) -COOH domain order. In some embodiments, the specific proteins targeting PSMA have a
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11/76 domain order of H2N- (A) - (C) - (B) -COOH. In some embodiments, the specific proteins targeting PSMA have an H2N- (B) - (A) - (C) -COOH domain order. In some embodiments, the specific proteins targeting PSMA have an H2N domain order (B) - (C) - (A) -COOH. In some embodiments, the specific proteins targeting PSMA have a domain order of H2N- (C) - (B) - (A) -COOH. In some embodiments, the specific proteins targeting PSMA have an H2N- (C) - (A) - (B) -COOH domain order.
[0033] In some embodiments, the specific proteins targeting PSMA have the HSA binding domain as the middle domain, so that the domain order is H 2 N- (A) - (B) - (C) -COOH or H 2 N- (C) - (B) - (A) -COOH. It is contemplated that in such modalities, where the HSA binding domain as the middle domain, the CD3 and PSMA binding domains have additional flexibility to bind to their respective targets.
[0034] In some embodiments, the specific proteins targeting PSMA, described herein, comprise a polypeptide having a sequence described in Table 10 (SEQ ID NO: 140-152) and its subsequences. In some embodiments, the antigen-binding protein tries to comprise a polypeptide having at least 70% to 95% or more homology with a sequence described in Table 10 (SEQ ID NO: 140-152). In some embodiments, the triespecific antigen-binding protein comprises a polypeptide having at least 70%, 75%, 80%, 85%, 90%, 95% or more homology with a sequence described in Table 10 (SEQ ID NO: 140 - 152). In some embodiments, the protein
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12/76 antigen-binding specimen has a sequence comprising at least a portion of a sequence described in Table 10 (SEQ ID NO: 140-152). In some embodiments, the PSMA antigen binding specific protein comprises a polypeptide comprising one or more of the sequences described in Table 10 (SEQ ID NO: 140-152). In other embodiments, the PSMA antigen-binding protein specifies comprises one or more CDRs as described in the sequences in Table 10 (SEQ ID NO: 140-152).
[0035] The trypecific proteins targeting PSMA described herein are designed to allow specific targeting of cells expressing PSMA by recruiting cytotoxic T cells. This improves effectiveness compared to ADCC (antibody-dependent cell-mediated cytotoxicity), which uses full-length antibodies targeting a single antigen and is not able to directly recruit cytotoxic T cells. In contrast, by coupling CD3 molecules specifically expressed in these cells, the specific proteins targeting PSMA can cross-link cytotoxic T cells with cells expressing PSMA in a highly specific manner, thus directing the T cell's cytotoxic potential to the target cell. The specific proteins targeting PSMA, described herein, involve cytotoxic T cells by binding CD3 proteins expressed on the surface, which are part of the TCR. Simultaneous binding of several PSMA antigen-binding proteins to CD3 and PSMA expressed on the surface of particular cells causes T cell activation by mediating subsequent cell lysis that expresses
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Private PSMA. Thus, the specific proteins targeting PSMA are designed to exhibit strong, specific and efficient target cell death. In some embodiments, the specific proteins targeting PSMA, described herein, stimulate the death of target cells by cytotoxic T cells to kill pathogenic cells (e.g., tumor cells expressing PSMA). In some of these modalities, the cells are selectively eliminated, thereby reducing the potential for toxic side effects.
[0036] The tried-specific proteins targeting PSMA, described herein, confer additional therapeutic advantages over traditional monoclonal antibodies and other minor bispecific molecules. Generally, the efficacy of recombinant protein pharmaceutical products depends heavily on the intrinsic pharmacokinetics of the protein itself. Such a benefit here is that the specific PSMA-targeting proteins described herein increased the pharmacokinetic elimination half-life due to having a half-life extension domain, such as an HSA-specific domain. In this regard, the specific proteins targeting PSMA, described herein, have a prolonged serum clearance time of about two, three, about five, about seven, about 10, about 12, or about 14 days in some modalities. This contrasts with other binding proteins, such as BiTE or DART molecules, which have relatively shorter elimination half-lives. For example, the biTE-specific scFv-scFv biTE CD19 x CD3 fusion molecule requires continuous intravenous (i.v.)
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14/76 drug administration due to its short elimination half-life. The longer intrinsic half-lives of specific trying proteins targeting PSMA address this issue, thereby enabling greater therapeutic potential, such as low-dose pharmaceutical formulations, decreased periodic administration and / or new pharmaceutical compositions.
[0037] The trying specific proteins targeting PSMA, described here, are also an optimal size for improved tissue penetration and tissue distribution. Larger sizes limit or prevent the penetration or distribution of the protein in the target tissues. The specific proteins targeting PSMA, described here, prevent this by having a small size that allows for improved tissue penetration and distribution. Consequently, the specific proteins targeting PSMA, described herein, in some embodiments have a size of about 50 kD to about 80 kD, about 50 kD to about 75 kD, about 50 kD to about 70 kD or about from 50 kD to about 65 kD. Thus, the size of the specific proteins targeting PSMA is advantageous in relation to IgG antibodies that are around 150 kD and the diacorporous molecules BiTE and DART that are around 55 kD but do not extend the half-life and therefore disappear quickly through the kidney.
[0038] In other modalities, the specific proteins targeting for PSMA, described here, are ideally sized for improved tissue penetration and distribution. In these modalities, the specific proteins targeting PSMA are built to be so small
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15/76 as possible, maintaining specificity for your targets. Consequently, in these embodiments, the specific PSMA-targeting proteins described herein are about 20 kD to about 40 kD in size or about 25 kD to about 35 kD to about 40 kD, about 45 kD to about 50 kD, about 60 kD, about 65 kD. In some embodiments, the specific PSMA targeting proteins described herein are about 50 kD, 49 kD, 48 kD, 47 kD, 46 kD, 45 kD, 44 kD, 43 kD, 42 kD, 41 kD, 40 kD, about 39 kD, about 38 kD, about 37 kD, about 36 kD, about 35 kD, about 34 kD, about 33 kD, about 32 kD, about 31 kD, about 30 kD, about 29 kD, about 28 kD, about 27 kD, about 26 kD, about 25 kD, about 24 kD, about 23 kD, about 22 kD, about 21 kD or about 20 kD. An exemplary approach to small size is through the use of single domain antibody (sdAb) fragments for each of the domains. For example, a particular PSMA antigen-binding protein has an anti-CD3 sdAb, an anti-HSA sdAb and an sdAb for PSMA. This reduces the size of the exemplary PSMA antigen-specific binding protein to below 40 kD. Thus, in some embodiments, the domains of the specific proteins targeting PSMA are all single domain antibody (sdAb) fragments. In other embodiments, the specific PSMA targeting proteins described herein comprise small molecule unit (SME) binders for HSA and / or PSMA. SME binders are small molecules with an average of about 500 to 2000 Da and are linked to specific proteins targeting PSMA by methods
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16/76 known, such as binding or conjugation of sortase. In these cases, one of the domains of the specific PSMA antigen-binding protein is a sortase recognition sequence, for example, LPETG (SEQ ID NO: 57). To bind an SME binder to a specific PSMA antigen-binding protein with a sortase recognition sequence, the protein is incubated with a sortase and an SME binder, where the sortase binds the SME binder to the recognition sequence. Known SME binders include MIP-1072 and MIP-1095 which bind to the prostate specific membrane antigen (PSMA). In still other embodiments, the PSMA-binding domain of tried-specific proteins targeting PSMA, described herein, comprises a knottin peptide to bind PSMA. Knottins are disulfide-stabilized peptides with a cistern knot structure and have average sizes of about 3.5 kD. Knottins were contemplated for binding to certain tumor molecules, such as PSMA. In other embodiments, the PSMA-binding domain of specific trying proteins targeting PSMA, described herein, comprises a natural PSMA ligand.
[0039] Another characteristic of the trying specific proteins targeting PSMA, described here, is that they are of a single polypeptide outline with flexible binding of their domains. This allows for easy production and manufacture of specific proteins targeting PSMA, since they can be encoded by a single cDNA molecule to be easily incorporated into a vector. In addition, because the specific proteins targeting PSMA, described here, are a simple monomeric polypeptide chain,
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17/76 there are no chain matching problems or a requirement for dimerization. It is contemplated that the tried specific proteins targeting PSMA, described herein, have a reduced tendency to aggregate unlike other reported molecules, such as bispecific proteins with Fcgama immunoglobulin domains.
[0040] In the trypecific proteins targeting PSMA, described here, the domains are linked by internal ligands LI and L2, where LI binds the first and second domains of the specific proteins targeting PSMA and L2 binds the second and third domains of the triespecific proteins targeting for PSMA. The LI and L2 linkers have an optimized length and / or an amino acid composition. In some embodiments, the LI and L2 ligands have the same length and amino acid composition. In other modalities, LI and L2 are different. In certain embodiments, the internal ligands LI and / or L2 are short, that is, they consist of 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 or 12 residues of amino acids. Thus, in certain cases, the internal linkers consist of about 12 or less residues of amino acids. In the case of 0 amino acid residues, the internal linker is a peptide bond. In certain embodiments, the internal ligands LI and / or L2 are long, that is, they consist of 15, 20 or 25 residues of amino acids. In some embodiments, these internal linkers consist of about 3 to about 15, for example, 8, 9 or 10 continuing amino acid residues. Regarding the amino acid composition of the internal ligands LI and L2, the peptides are selected with properties that give the proteins flexibility
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18/76 tries specific to PSMA, do not interfere with the binding domains, as well as resist degradation from proteases. For example, residues of glycine and serine generally provide resistance to protease. Examples of suitable internal ligands for ligating the domains on the specific proteins targeting PSMA include, but are not limited to (GS) n (SEQ ID NO: 153), (GGS) n (SEQ ID NO: 154), (GGGS) n (SEQ ID NO: 155), (GGSG) n (SEQ ID NO: 156), (GGSGG) n (SEQ ID NO: 157), or (GGGGS) n (SEQ ID NO: 158), where n is 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10. In one embodiment, the internal ligand LI and / or L2 is (GGGGS) 4 (SEQ ID NO: 159) or (GGGGS) 3 (SEQ ID NO: 160).
CD3 Binding Domain [0041] The specificity of the T cell response is mediated by the recognition of the antigen (displayed in the context of a major histocompatibility complex, MHC) by the TCR. As part of the TCR, CD3 is a protein complex that includes a CD3y chain (gamma), a CD3Ô chain (delta) and two CD3E chains (epsilon) that are present on the cell surface. CD3 is associated with the α (alpha) and β (beta) chains of the TCR, as well as CD3 ζ (zeta) together to compose the complete TCR. Agglomeration of CD3 into T cells, such as through immobilized anti-CD3 antibodies, leads to T cell activation similar to T cell receptor involvement, but regardless of its typical clone specificity.
[0042] In one aspect, the specific proteins targeting PSMA, described herein, comprise a domain that specifically binds to CD3. In one aspect, the specific proteins targeting PSMA, here
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19/76 described, comprise a domain that specifically binds to human CD3. In some embodiments, the specific proteins targeting PSMA, described herein, comprise a domain that specifically binds to CD3 γ. In some embodiments, the specific proteins targeting PSMA, described herein, comprise a domain that specifically binds to CD3Ô. In some embodiments, the specific proteins targeting PSMA, described herein, comprise a domain that specifically binds to CD3 ε.
[0043] In other embodiments, the specific proteins targeting PSMA, described herein, comprise a domain that specifically binds to the TCR. In certain cases, the specific proteins targeting PSMA, described herein, comprise a domain that specifically binds to the TCR chain. In certain cases, the specific proteins targeting PSMA, described herein, comprise a domain that specifically binds to the pCR chain of the TCR.
[0044] In certain embodiments, the CD3-binding domain of the specific proteins targeting PSMA, described herein, not only exhibit potent CD3-binding affinities with human CD3, but also show excellent cross-reactivity with the respective CD3 proteins of the cynomolgus monkey . In some cases, the CD3-binding domain of the trying specific proteins targeting PSMA cross-react with cynomolgus monkey CD3. In certain cases, the human Kd: cinomolgos ratios for CD3 are between 5 and 0.2.
[0045] In some modalities, the domain of connection to CD3
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The 20/76 of the specific PSMA antigen-binding protein can be any domain that binds to CD3, including but not limited to the domains of a monoclonal antibody, a polyclonal antibody, a recombinant antibody, a human antibody, a humanized antibody. In some cases, it is beneficial for the CD3 binding domain to be derived from the same species, in which the specific PSMA antigen binding protein will ultimately be used. For example, for use in humans, it may be beneficial for the CD3 binding domain of the specific PSMA antigen binding protein to comprise human or humanized residues from the antigen binding domain of an antibody or antibody fragment.
Thus, in one aspect, the antigen binding domain comprises a humanized or human antibody or an antibody fragment, or a murine antibody or antibody fragment. In one embodiment, the humanized or human anti-CD3 binding domain comprises one or more (for example, all three) complementary light chain 1 determining region (LC CDR1), complementary light chain 2 determining region (LC CDR2) and region complementary determinant of light chain 3 (LC CDR3) of a humanized or human anti-CD3 binding domain, described herein, and / or one or more (for example, the three) complementary determinant region of heavy chain 1 (HC CDR1), complementary heavy chain determining region 2 (HC CDR2) and complementary heavy chain determining region 3 (HC CDR3) of a humanized or human anti-CD3 binding domain, described herein, for example, a humanized anti-CD3 binding domain or human comprising one or more, for example, all three LC CDRs and one or more,
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21/76 for example, all three HC CDRs.
[0047] In some embodiments, the humanized or human anti-CD3 binding domain comprises a CD3 specific humanized or human light chain variable region, where the CD3 specific light chain variable region comprises non-human or human light chain CDRs in a human light chain structure region. In certain cases, the light chain structure region is a light chain structure λ (lamda). In other cases, the light chain structure region is a K light chain (kappa) structure.
In some embodiments, the humanized or human anti-CD3 binding domain comprises a CD3-specific humanized or human heavy chain variable region, wherein the CD3-specific heavy chain variable region comprises human or non-human heavy chain CDRs in a region of human heavy chain structure.
[0049] In certain cases, complementary determining regions of the heavy chain and / or light chain are derived from known anti-CD3 antibodies, such as, for example, muromonabe-CD3 (OKT3), otelixizumab (TRX4), teplizumab (MGA031 ), visilizumab (Nuvion), SP34, TR-66 or X35-3, VIT3, BMA030 (BW264 / 56), CLB-T3 / 3, CRIS7, YTH12.5, Fill-409, CLB-T3.4.2, TR- 66, WT32, SPv-T3b, 11D8, XIII-141, XIII-46, XIII-87, 12F6, T3 / RW2-8C8, T3 / RW2-4B6, OKT3D, MT301, SMC2, F101.01, UCHT-1 and WT-31.
[0050] In one embodiment, the anti-CD3 binding domain is a single chain variable fragment (scFv) comprising a light chain and a heavy chain of an amino acid sequence provided herein. As used herein, single-stranded variable fragment or scFv refers to
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22/76 to an antibody fragment comprising a light chain variable region and at least one antibody fragment comprising a heavy chain variable region, where the light and heavy chain variable regions are continuously linked via a short flexible polypeptide, and capable of being expressed as a single polypeptide chain, and in which scFv retain the specificity of the intact antibody from which it is derived. In one embodiment, the anti-CD3 binding domain comprises: a light chain variable region comprising an amino acid sequence having at least one, two or three modifications (for example, substitutions), but not more than 30, 20 or 10 modifications ( for example, substitutions) of an amino acid sequence of a light chain variable region provided herein, or a sequence with 95-99% identity to an amino acid sequence provided herein; and / or a heavy chain variable region comprising an amino acid sequence with at least one, two or three modifications (for example, substitutions) but not more than 30, 20 or 10 modifications (for example, substitutions) of an amino acid sequence heavy chain variable region, provided herein, or a 95-99% identity sequence to an amino acid sequence, provided herein. In one embodiment, the humanized or human anti-CD3 binding domain is a scFv and a light chain variable region comprising an amino acid sequence, described herein, linked to a heavy chain variable region comprising an amino acid sequence, described herein, via an scFv ligand. The variable region of the light chain and the variable region of the heavy chain of an scFv can be, for example, in any of the following
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23/76 orientations: variable region of the scFv light chain-ligand variable region of the heavy chain or variable region of the heavy chain-scFv ligand- variable region of the light chain.
[0051] In some cases, scFvs that bind to CD3 are prepared according to known methods. For example, scFv molecules can be produced by linking the VH and VL regions together using flexible polypeptide linkers. The scFv molecules comprise an scFv linker (e.g., a Ser-Gly linker) with an optimized length and / or an amino acid composition. Consequently, in some embodiments, the length of the scFv linker is such that the VH or VL domain can associate intermolecularly with the other variable domain to form the CD3 binding site. In certain embodiments, such scFv ligands are short, that is, they consist of 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 or 12 amino acid residues. Thus, in certain cases, scFv linkers consist of about 12 or less amino acid residues. In the case of 0 amino acid residues, the scFv linker is a peptide bond. In some embodiments, these scFv linkers consist of about 3 to about 15, for example, 8, 9 or 10 continuous amino acid residues. Regarding the amino acid composition of the scFv ligands, pepetids are selected that confer flexibility, do not interfere with the variable domains, as well as allow the inter-chain fold to join the two variable domains to form a functional CD3 binding site. For example, scFv linkers comprising glycine and serine residues generally provide resistance to protease. In some embodiments, scFv linkers comprising glycine and serine residues. The amino acid sequence of the ligands
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24/76 scFv can be optimized, for example, by phage display methods to improve the binding of CD3 and the production yield of scFv. Examples of suitable peptide scFv linkers to link a light chain variable domain and a heavy chain variable domain in an scFv include
but are not limited to (GS) n (SEQ ID NO: 153), (GGS) n (SEQ ID NO: 154), (GGGS) n (SEQ ID NO: 155), (GGSG) n (SEQ ID AT THE: 156), (GGSGG) n (SEQ ID NO: 157), or (GGGGS) n (SEQ ID AT THE: 158), where n is 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10. In modality, the scFv linker can be ((GGGGS) 4 (SEQ
ID NO: 159) or (GGGGS) 3 (SEQ ID NO: 160). Variation in ligand length can retain or increase activity, giving rise to superior effectiveness in activity studies.
[0052] In some embodiments, the CD3 binding domain of the PSMA antigen-specific binding protein has an affinity for CD3 in cells expressing CD3 with a Kd of 1000 nM or less, 500 nM or less, 200 nM or less, 100 nM or less, 80 nM or less, 50 nM or less, 20 nM or less, 10 nM or less, 5 nM or less, 1 nM or less, or 0.5 nM or less. In some embodiments, the CD3 binding domain of the specific PSMA antigen-binding protein has an affinity for CD3 ε, γ or δ with a Kd of 1000 nM or less, 500 nM or less, 200 nM or less, 100 nM or less, 80 nM or less, 50 nM or less, 20 nM or less, 10 nM or less, 5 nM or less, 1 nM or less, or 0.5 nM or less. In other embodiments, the CD3-binding domain of the specific PSMA antigen-binding protein has low affinity for CD3, i.e., about 100 nM or more.
[0053] The affinity to bind to CD3 can be determined, for example, by the ability of the CD3 itself
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25/76 PSMA antigen-specific protein or its CD3-binding domain to bind to coated CD3 in an assay plate; displayed on a microbial cell surface; in solution; etc. The binding activity of the PSMA antigen-specific binding protein itself or of its CD3 binding domain of the present CD3 washout can be assayed by immobilizing the ligand (for example, CD3) or the PSMA antigen-specific binding protein itself its binding domain to CD3, to a sphere, substrate, cell, etc. The agents can be added in an appropriate buffer and the binding partners incubated for a period of time at a given temperature. After washing to remove unbound material, the bound protein can be released with, for example, SDS, buffers with a high pH and the like and analyzed, for example, by Plasmonic Surface Resonance (SPR).
[0054] In some embodiments, the CD3-binding domains, described herein, comprise a polypeptide having a sequence described in Table 7 (SEQ ID NO: 1-88) and its subsequences. In some embodiments, the CD3 binding domain comprises a polypeptide having at least 70% -95% or more homology with a sequence described in Table 7 (SEQ ID NO: 1-88). In some embodiments, the CD3-binding domain comprises a polypeptide having at least 70%, 75%, 80%, 85%, 90%, 95% or more homology with a sequence described in Table 7 (SEQ ID NO: 1- 88). In some embodiments, the CD3 binding domain has a sequence comprising at least a portion of a sequence described in Table 7 (SEQ ID NO: 1-88). In some embodiments, the CD3-binding domain comprises a polypeptide
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26/76 comprising one or more of the sequences described in Table 7 (SEQ ID NO: 1-88).
[0055] In certain embodiments, the CD3 binding domain comprises a scFv with a heavy chain CDR1 comprising SEQ ID NO: 16 and 22-33. In certain embodiments, the CD3 binding domain comprises a scFv with a heavy chain CDR2 comprising SEQ ID NO: 17 and 34-43. In certain embodiments, the CD3 binding domain comprises a scFv with a heavy chain CDR3 comprising SEQ ID NO: 18 and 44-53. In certain embodiments, the CD3 binding domain comprises a scFv with a light chain CDR1 comprising SEQ ID NO: 19 and 54-66. In certain embodiments, the CD3 binding domain comprises a scFv with a light chain CDR2 comprising SEQ ID NO: 20 and 67-7 9. In certain embodiments, the CD3 binding domain comprises a scFv with a light chain CDR3 comprising SEQ ID NO: 21 and 80-86.
Half-life extension domain [0056] Contemplated here are domains that extend the half-life of an antigen-binding domain. Such domains are contemplated to include but are not limited to HSA binding domains, Fc domains, small molecules and other half-life extension domains known in the art.
[0057] Human serum albumin (HSA) (molecular mass ~ 67 kDa) is the most abundant protein in plasma, present at about 50 mg / mL (600 μΜ) and has a half-life of about 20 days in humans. HSA serves to maintain plasma pH, contributes to colloidal blood pressure, acts as a vehicle for many metabolites and fatty acids, and serves as an important drug carrier protein in plasma.
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27/76 [0058] The non-covalent association with albumin prolongs the elimination time interval of short-lived proteins. For example, a recombinant fusion of an albumin-binding domain to a Fab fragment resulted in an in vivo clearance of 25 and 58 times and a half-life span of 26 and 37 times when administered intravenously to mice and rabbits, respectively, as compared with the administration of the Fab fragment alone. In another example, when insulin is acylated with fatty acids to promote the association with albumin, a prolonged effect was observed when injected subcutaneously in rabbits or pigs. Together, these studies demonstrate a link between binding to albumin and prolonged action.
[0059] In one aspect, the specific proteins targeting PSMA, described herein, comprise a half-life extension domain, for example, a domain that specifically binds to HSA. In some embodiments, the HSA binding domain of the specific PSMA antigen binding protein can be any domain that binds to HSA including but not limited to the domains of a monoclonal antibody, a polyclonal antibody, a recombinant antibody, a human antibody, a humanized antibody. In some embodiments, the HSA binding domain is a single chain variable fragment (scFv), single domain antibody, such as a heavy chain variable domain (VH), a light chain variable domain (VL) and a variable domain Single domain antibody (VHH) derived from camelid, peptide, ligand or small molecule unit specific for HSA. In certain embodiments, the HSA-binding domain is a single domain antibody. In others
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28/76 modalities, the HSA binding domain is a peptide. In other embodiments, the HSA binding domain is a small molecule. It is contemplated that the HSA binding domain of the protein tries to specify binding to the PSMA antigen is reasonably small and no more than 25 kD, no more than 20 kD, no more than 15 kD or no more than 10 kD in some embodiments. In certain cases, HSA binding is 5 kD or less if it is a peptide or small molecule unit.
[0060] The half-life domain of the PSMA antigen-binding protein triespecific provides altered pharmacodynamics and pharmacokinetics of the PSMA antigen-binding protein itself. As above, the half-life extension domain increases the elimination time. The half-life extension domain also alters pharmacodynamic properties, including alteration of tissue distribution, penetration and diffusion of the antigen-binding protein. In some embodiments, the half-life extension domain provides improved tissue targeting (including tumor), tissue distribution, tissue penetration, diffusion into the tissue and increased efficiency compared to a protein without a half-extension domain life. In one embodiment, therapeutic methods effectively and efficiently use a reduced amount of the specific antigen-binding protein, resulting in reduced side effects, such as reduced non-tumor cell cytotoxicity.
[0061] Furthermore, the binding affinity of the half-life extension domain can be selected in order to target a specific elimination time interval in
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29/76 a specific protein that binds to the particular antigen. Thus, in some embodiments, the half-life extension domain has a high binding affinity. In other embodiments, the half-life extension domain has a medium binding affinity. In yet other modalities, the half-life extension domain has a low or marginal binding affinity. Exemplary binding affinities include concentrations of Kd at 10 nM or less (high), between 10 nM and 100 nM (average) and greater than 100 nM (low). As above, HSA binding affinities are determined by known methods such as surface plasmon resonance (SPR).
[0062] In some embodiments, the HSA binding domains, described herein, comprise a polypeptide having a sequence described in Table 8 (SEQ ID NO: 89-112) and its subsequences. In some embodiments, the HSA-binding domain comprises a polypeptide having at least 70% -95% or more homology with a sequence described in Table 8 (SEQ ID NO: 89-112). In some embodiments, the HSA binding domain comprises a polypeptide having at least 70%, 75%, 80%, 85%, 90%, 95% or more homology with a sequence described in Table 8 (SEQ ID NO: 89- 112). In some embodiments, the HSA-binding domain has a sequence comprising at least a portion of a sequence described in Table 8 (SEQ ID NO: 89-112). In some embodiments, the HSA-binding domain comprises a polypeptide comprising one or more of the sequences described in Table 8 (SEQ ID NO: 89-112).
[0063] In some embodiments, the HSA-binding domains, described herein, comprise an antibody domain
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30/76 unique with a CDR1 comprising SEQ ID NO: 96 and 99-101. In some embodiments, the HSA binding domains, described herein, comprise a single domain antibody with a CDR1 comprising SEQ ID NO: 97 and 102-107. In some embodiments, the HSA binding domains, described herein, comprise a single domain antibody with a CDR1 comprising SEQ ID NO: 98, 108 and 109.
Prostate Specific Membrane Antigen (PSMA) Binding Domain [0064] Prostate specific membrane antigen (PSMA) is a 100 kD type II membrane glycoprotein expressed in prostate tissues having sequence identity with the receptor of the transferrin with NAALADase activity. PSMA is expressed in increased amounts in prostate cancer, and elevated PSMA levels are also detectable in the sera of these patients. PSMA expression increases with disease progression, becoming higher in hormone-refractory disease, metastasis, for which no therapy is present.
[0065] In addition to the CD3 extension domains and half-life extension domains, the specific proteins targeting PSMA, described herein, also comprise a domain that binds PSMA. The design of the specific PSMA-targeting proteins described herein allows the PSMA-binding domain to be flexible in that the PSMA-binding domain can be any type of binding domain, including but not limited to domains of an antibody monoclonal, a polyclonal antibody, a recombinant antibody, a human antibody, a humanized antibody. In some modalities, the domain
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31/76 binding to PSMA is a single chain variable fragment (scFv), single domain antibody, such as a heavy chain variable domain (VH), a light chain variable domain (VL) and a variable domain (VHH ) of single domain antibody derived from camelid. In other embodiments, the PSMA binding domain is a non-Ig binding domain, that is, mimetic antibody, such as anticalins, afilines, apical body molecules, aphimers, aphines, alpha-corporomeans, avimers, DARPins, finomers, peptides of the kunitz domain and monocorporeal. In other embodiments, the PSMA binding domain is a ligand or peptide that binds to or associates with PSMA. In yet other modalities, the PSMA-binding domain is a knottin. In still other modalities, the PSMA-binding domain is a small molecular unit.
[0066] In some embodiments, the PSMA binding domain comprises the following formula: f1-rl-f2-r2-f3-r3-f4, where rl, r2 and r3 are complementarity determining regions CDR1, CDR2 and CDR3, respectively , and fl, f2, f3 and f4 are residues of the structure, and where rl comprises SEQ ID NO. 114, SEQ ID NO. 115, SEQ ID NO. 116, or SEQ ID NO: 125, r2 comprises SEQ ID NO. 117, SEQ. ID NO. 118, SEQ ID NO. 119, SEQ ID NO. 120, SEQ ID NO. 121, SEQ ID NO. 122, SEQ ID NO. 123, or SEQ ID NO: 126, and r3 comprises SEQ ID NO. 124, or SEQ. ID NO: 127.
[0067] In some embodiments, the PSMA binding domain comprises a CDR1, CDR2 and CDR3, where (a) the amino acid sequence of CDR1 is as set out in SEQ ID No. 162 (RFMISX1YX2MH), (b) the sequence amino acid content of CDR2 is as set out in SEQ ID No. 163 (X 3 INPAX4X 5 TDYAEX6VKG), and (c)
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32/76 the amino acid sequence of CDR3 is as set out in SEQ ID No. 164 (DX YGY). In some embodiments, amino acid residues Xi, X2, X3, X4, X5, Xe, and X they are independently selected from glutamic acid, proline, serine, histidine, threonine, aspartic acid, glycine, lysine, threonine, glutamine and tyrosine. In some embodiments, Xi is proline. In some embodiments, X2 is histidine. In some embodiments, X3 is aspartic acid. In some embodiments, X4 is lysine. In some modalities, X5 is glutamine. In some embodiments, Xg is tyrosine. In some modalities, X it's serine. The PSMA-binding protein of the present disclosure may in some embodiments comprise sequences of CDR1, CDR2 and CDR3, where Xi is glutamic acid, X2 is histidine, X3 is aspartic acid, X4 is glycine, X5 is threonine, Xg is serine and X it's serine.
[0068] In some embodiments, the PSMA binding domain comprises a CDR1, CDR2 and CDR3, where (a) the amino acid sequence of CDR1 is as set out in SEQ No. 162 (RFMISX1YX2MH), (b) the sequence of amino acids of CDR2 is as set out in SEQ ID NO. 163 (X 3 INPAX 4 X5TDYAEX 6 VKG), and (c) the amino acid sequence of CDR3 is as set out in SEQ ID NO. 164 (DX7YGY), where Xi is proline. In some embodiments, the PSMA binding domain comprises a CDR1, CDR2 and CDR3, where (a) the amino acid sequence of CDR1 is as set out in SEQ ID NO. 162 (RFMISX1YX2MH), (b) the amino acid sequence of CDR2 is as set out in SEQ ID NO. 163 (X 3 INPAX 4 X5TDYAEXgVKG), and (c) the amino acid sequence of CDR3 is as set out in SEQ ID NO. 164 (DX YGY), where X5 is glutamine. In some embodiments, the PSMA binding domain comprises a CDR1, CDR2 and CDR3,
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33/76 wherein (a) the amino acid sequence of CDR1 is as set out in SEQ ID NO. 162 (RFMISX1YX2MH), (b) the amino acid sequence of CDR2 is as set out in SEQ ID NO. 163 (X3INPAX4X5TDYAEX6VKG), and (c) the amino acid sequence of CDR3 is as set out in SEQ ID NO. 164 (DX7YGY), where Xg is tyrosine. In some embodiments, the PSMA binding domain comprises a CDR1, CDR2 and CDR3, where (a) the amino acid sequence of CDR1 is as set out in SEQ ID NO. 162 (RFMISX1YX2MH), (b) the amino acid sequence of CDR2 is as set out in SEQ ID NO. 163 (X3INPAX4X5TDYAEX6VKG), and (c) the amino acid sequence of CDR3 is as set out in SEQ ID NO. 164 (DX YGY), where X4 is lysine and X7 is serine. In some embodiments, the PSMA binding domain comprises a CDR1, CDR2 and CDR3, where (a) the amino acid sequence of CDR1 is as set out in SEQ ID No. 162 (RFMISX1YX2MH), (b) the amino acid sequence of CDR2 is as set out in SEQ ID No. 163 (X3INPAX 4 X5TDYAEX 6 VKG), and (c) the amino acid sequence of CDR3 is as set out in SEQ ID No. 164 (DX7YGY), where X2 is histidine, X3 is acid aspartic, X4 is lysine and X7 is serine. In some embodiments, the PSMA binding domain comprises a CDR1, CDR2 and CDR3, where (a) the amino acid sequence of CDR1 is as set out in SEQ ID No. 162 (RFMISX1YX2MH), (b) the amino acid sequence of CDR2 is as set out in SEQ ID No. 163 (X3INPAX4X5TDYAEX6VKG), and (c) the amino acid sequence of CDR3 is as set out in SEQ ID NO. 164 (DX7YGY), where Xi is proline, X2 is histidine, X3 is aspartic acid and X7 is serine. In some embodiments, the PSMA binding domain comprises a CDR1, CDR2 and CDR3, where (a) the sequence of
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34/76 amino acids of CDR1 is as set out in SEQ ID NO. 162 (RFMISX1YX2MH), (b) the amino acid sequence of CDR2 is as set out in SEQ ID NO. 163 (X 3 INPAX 4 X5TDYAEXgVKG) and (c) the amino acid sequence of CDR3 is as set out in SEQ ID NO. 164 (DX7YGY), where X 2 is histidine, X3 is aspartic acid, X5 is glutamine and X it's serine. In some embodiments, the PSMA binding domain comprises a CDR1, CDR2 and CDR3, where (a) the amino acid sequence of CDR1 is as set out in SEQ ID NO. 162 (RFMISX1YX2MH), (b) the amino acid sequence of CDR2 is as set out in SEQ ID NO. 163 (X3INPAX4X5TDYAEX6VKG), and (c) the amino acid sequence of CDR2 is as set out in SEQ ID NO. 164 (DX YGY), where X2 is histidine, X3 is aspartic acid, Xg is tyrosine and X7 is serine. In some embodiments, the PSMA binding domain comprises a CDR1, CDR2 and CDR3, where (a) the amino acid sequence of CDR1 is as set out in SEQ ID NO. 162 (RFMISX1YX2MH), (b) the amino acid sequence of CDR2 is as set out in SEQ ID NO. 163 (X3INPAX4X5TDYAEX6VKG), and (c) the amino acid sequence of CDR3 is as set out in SEQ ID NO. 164 (DX7YGY), where X2 is histidine, X3 is aspartic acid and X7 is serine.
The PSMA-binding domain of the present disclosure may in some embodiments comprise sequences of CDR1, CDR2 and CDR3, where Xi is glutamic acid, X2 is histidine, X3 is threonine, X4 is glycine, X5 is threonine, Xg is serine and X7 is serine. The PSMA-binding domain of the present disclosure may, in some embodiments, comprise sequences CDR1, CDR2 and CDR3, where Xi is glutamic acid, X2 is histidine, X3 is threonine, X4 is glycine, X5 is threonine, Xg is serine and X7 is serine. The PSMA-binding domain of the present disclosure
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35/76 can, in some modalities, comprise sequences of CDR1, CDR2 and CDR3, where Xi is glutamic acid, X2 is serine, X3 is threonine, X4 is lysine, X5 is threonine, Xg is serine and X it's serine. The PSMA-binding domain of the present disclosure may, in some embodiments, comprise CDR1, CDR2 and CDR3 sequences where Xi is proline, X2 is serine, X3 is threonine, X4 is glycine, X5 is threonine, Xg is serine and X is glycine. The PSMA-binding domain of the present disclosure may, in some embodiments, comprise sequences of CDR1, CDR2 and CDR3, where Xi is glutamic acid, X2 is serine, X3 is threonine, X4 is glycine, X5 is glutamine, Xg is serine and X is glycine. The PSMA-binding domain of the present disclosure may, in some embodiments, comprise sequences of CDR1, CDR2 and CDR3, where Xi is glutamic acid, X2 is serine, X3 is threonine, X4 is glycine, X5 is threonine, Xg is tyrosine and X is glycine. The PSMA-binding domain of the present disclosure may, in some embodiments, comprise CDR1, CDR2 and CDR3 sequences, where Xi is glutamic acid, X2 is histidine, X3 is aspartic acid, X4 is lysine, X5 is threonine, Xg is serine and X it's serine. The PSMA-binding domain of the present disclosure may, in some embodiments, comprise sequences of CDR1, CDR2 and CDR3 where Xi is proline, X2 is histidine, X3 is aspartic acid, X4 is glycine, X5 is threonine, Xg is serine and X it's serine. The PSMA-binding domain of the present disclosure may, in some embodiments, comprise CDR1, CDR2 and CDR3 sequences where Xi is glutamic acid, X2 is histidine, X3 is aspartic acid, X4 is glutamine, X5 is threonine, Xg is serine and X it's serine. The PSMA-binding domain of the present disclosure may, in some embodiments, comprise sequences of CDR1, CDR2 and CDR3 where Xi is acid
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36/76 glutamic, X2 is histidine, X3 is aspartic acid, X4 is glycine, X5 is threonine, Xs is tyrosine and X it's serine. The PSMA-binding domain of the present disclosure may, in some embodiments, comprise sequences of CDR1, CDR2 and CDR3, where X2 is histidine and X it's serine. Exemplary structural sequences are disclosed as SEQ ID NO: 165-168.
[0070] In some embodiments, the PSMA binding domains described herein comprise a polypeptide having a sequence described in Table 9 (SEQ ID NO: 113-140) and its subsequences. In some embodiments, the HSA-binding domain comprises a polypeptide having at least 70% -95% or more homology with a sequence described in Table 9 (SEQ ID NO: 113-140). In some embodiments, the HSA binding domain comprises a polypeptide having at least 70%, 75%, 80%, 85%, 90%, 95% or more homology with a sequence described in Table 9 (SEQ ID NO: 113- 140). In some embodiments, the HSA binding domain has a sequence comprising at least a portion of a sequence described in Table 9 (SEQ ID NO: 113-140). In some embodiments, the HSA-binding domain comprises a polypeptide comprising one or more of the sequences described in Table 9 (SEQ ID NO: 113-140).
[0071] In some embodiments, the PSMA binding domains, described herein, comprise a single domain antibody with a CDR1 comprising SEQ ID NO: 114-116 and 125. In some embodiments, the PSMA binding domains, described herein , comprise a single domain antibody with a CDR1 comprising SEQ ID NO: 117-123 and 12 6. In some embodiments, the PSMA binding domains, described herein, comprise a single domain antibody with a CDR1
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37/76 comprising SEQ ID NO: 124 and 127.
PSMA Trispecific Protein Modifications [0072] The tryma specific proteins targeting PSMA, described herein, encompass derivatives or analogues, in which (i) an amino acid is replaced with an amino acid residue that is not encoded by the genetic code, (ii) the polypeptide mature is fused with another compound, such as polyethylene glycol, or (iii) additional amino acids are fused to the protein, such as a leader or secretory sequence or a sequence for protein purification.
[0073] Typical modifications include, but are not limited to, acetylation, acylation, ADP ribosylation, amidation, flavin covalent bond, heme portion covalent bond, nucleotide or nucleotide derivative covalent bond, lipid covalent bond or lipid derivative, covalent phosphatidylinositol bonding, crosslinking, cyclization, disulfide bonding, demethylation, covalent crosslinking, cystine formation, pyroglutamate formation, formulation, gamma carboxylation, glycosylation, GPI anchor formation, hydroxylation, iodination, methylation , myristoylation, oxidation, proteolytic processing, phosphorylation, prenylation, racemization, selenoylation, sulfation, RNA-mediated addition of amino acid transfer to proteins, such as arginylation and ubiquitination.
[0074] The modifications are made anywhere in the specific proteins targeting PSMA, described here, including the peptide backbone, the side chains of the amino acids and the amino or carboxyl terminals. Certain common peptide modifications that are useful for the
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38/76 modification of triespecific proteins targeting PSMA include glycosylation, lipid binding, sulfation, gamma-carboxylation of glutamic acid residues, hydroxylation, blocking of the amino or carboxyl group in a polypeptide, or both, by covalent modification and ADPribosylation.
Polynucleotides encoding triespecific Proteins directing to PSMA [0075] Polynucleotide molecules encoding a specific PSMA antigen-binding protein, described herein, are also provided in some embodiments. In some embodiments, polynucleotide molecules are provided as a DNA construct. In other embodiments, the polynucleotide molecules are supplied as a messenger RNA transcript.
[0076] Polynucleotide molecules are constructed by known methods, such as by combining the genes encoding the three binding domains or separated by peptide ligands or, in other modalities, directly linked by a peptide bond, in a single genetic construct operatively linked to a suitable promoter, and optionally a suitable transcription terminator, and expressing it in bacteria or another appropriate expression system such as, for example, CHO cells. In embodiments, where the PSMA binding domain is a small molecule, polynucleotides contain genes that encode the CD3 binding domain and the half-life extension domain. In modalities, in which the half-life extension domain is a small molecule, polynucleotides contain genes that encode domains that bind to CD3 and
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39/76
PSMA. Depending on the vector and host system used, any number of suitable transcription and translation elements can be used, including constitutive and inducible promoters. The promoter is selected in such a way as to drive expression of the polynucleotide in the respective host cell.
[0077] In some modalities, the polynucleotide is inserted into a vector, preferably an expression vector, which represents another modality. This recombinant vector can be constructed according to known methods. Vectors of particular interest include plasmids, phagemids, phage derivatives, viruses (e.g., retroviruses, adenoviruses, adeno-associated viruses, herpes viruses, lentiviruses and the like) and cosmids.
[0078] A variety of vector / host expression systems can be used to contain and express the polynucleotide encoding the described antigen-binding protein polypeptide. Examples of expression vectors for expression in E. coli are pSKK (Le Gall et al., J Immunol Methods. (2004) 285 (1): 111-27) or pcDNA5 (Invitrogen) for expression in mammalian cells.
[0079] Thus, the specific proteins targeting PSMA, described here, in some embodiments, are produced by introducing a vector encoding the protein, as described above, into a host cell and culturing said host cell under conditions, in which the protein domains are expressed, can be isolated and, optionally, still purified.
Pharmaceutical Compositions [0080] In some modalities, they are also provided
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40/76 pharmaceutical compositions comprising a specific PSMA antigen-binding protein described herein, a vector comprising the polynucleotide encoding the polypeptide of specific proteins directed to PSMA or a host cell transformed by this vector and at least one pharmaceutically acceptable carrier. The term pharmaceutically acceptable carrier includes, but is not limited to, any carrier that does not interfere with the effectiveness of the biological activity of the ingredients and that is not toxic to the patient, to whom it is administered. Examples of suitable pharmaceutical carriers are well known in the art and include phosphate buffered saline solutions, water, emulsions, such as oil / water emulsions, various types of wetting agents, sterile solutions, etc. Such vehicles can be formulated by conventional methods and can be administered to the individual at an appropriate dose. Preferably, the compositions are sterile. These compositions can also contain adjuvants, such as preservatives, emulsifying agents and dispersing agents. The prevention of the action of microorganisms can be ensured by the inclusion of various antibacterial and antifungal agents.
[0081] In some modalities of pharmaceutical compositions, the specific proteins targeting for PSMA described here are encapsulated in nanoparticles. In some embodiments, nanoparticles are fullerenes, liquid crystals, liposomes, quantum dots, superparamagnetic nanoparticles, dendrimers or nanobonds. In other embodiments of pharmaceutical compositions, the protein tries to bind to the
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41/76 PSMA antigen bound to liposomes. In some cases, the specific PSMA antigen-binding protein is conjugated to the surface of the liposomes. In some cases, the specific PSMA antigen-binding protein is encapsulated within the envelope of a liposome. In some cases, the liposome is a cationic liposome.
[0082] The specific proteins targeting PSMA, described here, are contemplated for use as a medicine. Administration is carried out in different ways, for example, by intravenous, intraperitoneal, subcutaneous, intramuscular, topical or intradermal administration. In some embodiments, the route of administration depends on the type of therapy and the type of compound contained in the pharmaceutical composition. The dosage regimen will be determined by the attending physician and other clinical factors. Dosages for any patient depend on many factors, including patient size, body surface area, age, sex, the specific compound to be administered, time and route of administration, type of therapy, general health and other drugs being administered at the same time. An effective dose refers to the amounts of the active ingredient that are sufficient to affect the course and severity of the disease, leading to the reduction or remission of such a pathology, and can be determined using known methods.
Treatment methods [0083] Also, in some modalities, methods and uses are provided here to stimulate the immune system of an individual in need of it, including the administration of a specific protein targeting
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Μ / Ίζ>
for PSMA, described here. In some cases, the administration of a trypecific protein targeting PSMA, described herein, induces and / or sustains cytotoxicity to a cell expressing PSMA. In some cases, the cell that expresses PSMA is a cancer cell.
[0084] Methods and uses for the treatment of a disease, disorder or condition associated with PSMA are also provided herein comprising administering to an individual in need of a specific PSMA-targeting protein described herein. Diseases, disorders or conditions associated with PSMA include, but are not limited to, a proliferative disease or a tumor disease. In one embodiment, the disease, disorder or condition associated with PSMA is prostate cancer. In another embodiment, the disease, disorder or condition associated with PSMA is kidney cancer.
[0085] In some modalities, prostate cancer is an advanced stage prostate cancer. In some modalities, prostate cancer is resistant to the drug. In some modalities, prostate cancer is resistant to the anti-androgen drug. In some modalities, prostate cancer is metastatic. In some modalities, prostate cancer is metastatic and resistant to drugs (for example, resistant to anti-androgen drugs). In some modalities, prostate cancer is resistant to castration. In some modalities, prostate cancer is metastatic and resistant to castration. In some modalities, prostate cancer is resistant to enzalutamide. In some modalities, prostate cancer is resistant to enzalutamide and arbiraterone. In some modalities, prostate cancer is resistant to
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43/76 enzialutamide, arbiraterone and bicalutamide. In some modalities, prostate cancer is resistant to docetaxel. In some of these modalities, prostate cancer is resistant to enzalutamide, arbiraterone, bicalutamide and docetaxel.
[0086] In some embodiments, the administration of a specific protein targeting PSMA, described herein, inhibits the growth of prostate cancer cells; inhibits the migration of prostate cancer cells; inhibits invasion of prostate cancer cells; improves symptoms of prostate cancer; reduces the size of a prostate cancer tumor; reduces the number of prostate cancer tumors; reduces the number of prostate cancer cells; induces necrosis of prostate cancer cells, pyroptosis, oncosis, apoptosis, autophagy or other cell death; or increases the therapeutic effects of a compound selected from the group consisting of enzalutamide, abiraterone, docetaxel, bicalutamide and any combinations thereof.
[0087] In some embodiments, the method comprises inhibiting the growth of prostate cancer cells by administering a specific protein targeting PSMA, described herein. In some embodiments, the method comprises inhibiting the migration of prostate cancer cells by administering a triespecific protein targeting PSMA, described herein. In some embodiments, the method comprises inhibiting prostate cancer cell invasion by administering a specific tries targeting PSMA, described herein. In some embodiments, the method involves improving the symptoms of prostate cancer by administering
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44/76 of a triespecific protein targeting PSMA, described herein. In some embodiments, the method involves reducing the size of a prostate cancer tumor by administering a specific PSMA-targeting protein, described here. In some modalities, the method involves reducing the number of prostate cancer tumors through the administration of a specific protein targeting PSMA, described here. In some embodiments, the method comprises reducing the number of prostate cancer cells by administering a specific, specific protein targeting PSMA, described here. In some modalities, the method comprises the induction of prostate cancer cell necrosis, pyroptosis, oncosis, apoptosis, autophagy or other cell death through the administration of a specific protein targeting PSMA, described here.
[0088] As used here, in some modalities, treatment or treating or treated refers to therapeutic treatment, in which the object is to delay (decrease) an unwanted physiological condition, disorder or disease, or to obtain beneficial or desired clinical results. For the purposes described herein, beneficial or desired clinical results include, but are not limited to, symptom relief; decrease in the extent of the condition, disorder or disease; stabilization (that is, it does not worsen) of the condition, disorder or disease; delay in starting or slowing the progression of the condition, disorder or disease; improvement of the condition, disorder or state of illness; and remission (whether partial or total), whether detectable or undetectable, or increase or improvement in condition, disorder
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45/76 or illness. Treatment includes eliciting a clinically significant response without excessive levels of side effects. Treatment also includes prolonging survival compared to expected survival if you do not receive treatment. In other modalities, treatment or treating or treated refers to prophylactic measures, in which the objective is to delay the onset or reduce the severity of a physiological condition, disorder or unwanted disease, such as, for example, a person who is predisposed to a disease (for example, an individual who carries a genetic marker for a disease such as prostate cancer).
[0089] In some modalities of the methods, described herein, the specific proteins targeting PSMA are administered in combination with an agent to treat the particular disease, disorder or condition. Agents include, but are not limited to, therapies involving antibodies, small molecules (for example, chemotherapeutics), hormones (steroids, peptides and the like), radiotherapy (γ-rays, X-rays and / or the targeted administration of radioisotopes, microwaves , UV radiation and the like), gene therapies (for example, antisense, retroviral and the like) and other immunotherapies. In some embodiments, the specific proteins targeting PSMA are administered in combination with antidiarrheal agents, antiemetic agents, analgesics, opioids and / or non-steroidal anti-inflammatory agents. In some embodiments, the specific proteins targeting PSMA are administered before, during, or after surgery.
Certain definitions
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46/76 [0090] As used here, elimination time interval is used in its common sense, as described in Goodman and Gillman's The Pharmaceutical Basis of Therapeutics 21-25 (Alfred Goodman Gilman, Louis S. Goodman, and Alfred Gilman , eds 6th, 1980). Briefly, the term is intended to cover a quantitative measure of the course over time of drug elimination. The elimination of most drugs is exponential (that is, it follows first-order kinetics), since the concentrations of the drug generally do not approach those required for the saturation of the elimination process. The rate of an exponential process can be expressed by its rate constant, k, which expresses the fractional change per unit of time, or by its half-time, ti / 2 the time required to complete 50% of the process. The units of these two constants are time 1 and time, respectively. A first order rate constant and the reaction time interval are simply related (kx ti / 2 = 0.693) and can be changed accordingly. Since first order elimination kinetics dictates that a constant fraction of the drug is lost per unit of time, a graph of the drug concentration versus time log is linear at all times following the initial distribution phase (ie, after drug absorption and distribution are complete). The time frame for drug elimination can be precisely determined from such a graph.
[0091] As used here, the phrase prostate cancer or advanced stage of prostate cancer includes a class of prostate cancer that has progressed beyond the early stages of the disease. Usually, prostate cancer in
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47/76 advanced stage is associated with a poor prognosis. Types of advanced prostate cancers include, but are not limited to, metastatic prostate cancer, drug-resistant prostate cancer, such as androgen-resistant prostate cancer (eg, enzalutamide-resistant prostate cancer, prostate cancer abiraterone resistant, bicalutamide resistant prostate cancer, and the like), refractory hormone prostate cancer, castration-resistant prostate cancer, castration-resistant metastatic prostate cancer, docetaxel-resistant prostate cancer, drug-resistant prostate cancer variant-7-induced (ARV7) androgen receptor splice, such as AR-V7-induced antiandrogen-resistant prostate cancer (eg, AR-V7-induced enzyme-resistant prostate cancer), drug-resistant prostate cancer by a member of the aldo-keto reductase C3 (AKR1C3) family, as AKR1C3 induces gone by prostate-resistant anti-androgen (eg, AKR1C3-induced enzyme-resistant prostate cancer), and combinations thereof. In some cases, prostate cancers in
advanced stage, usually, no respond, or are resistant, to treatment with an or more of next conventional therapies for O cancer of prostate:
enzalutamide, arbiraterone, bicalutamide and docetaxel. Compounds, compositions and methods of the present disclosure are provided to treat prostate cancer, such as advanced prostate cancer, including any or more (for example, two, three, four, five, six, seven, eight, nine, ten or more) of the types of cancers of the
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48/76 advanced prostate, disclosed here.
EXAMPLES
Example 1: Methods for evaluating the binding and cytotoxic activity of antigen-binding specific molecules
Protein Production [0092] The sequences of triespecific molecules were cloned into the mammalian expression vector pcDNA 3.4 (Invitrogen) preceded by a leader sequence and followed by a Histidine 6x marker (SEQ ID NO: 161). Expi293F cells (Life Technologies A14527) were kept in suspension in flasks of optimum growth (Thomson) between 0.2 to 8 x le6 cells / mL in Expi293 medium. The purified plasmid DNA was transfected into Expi293 cells according to the Expi293 Expression System Kit protocols (Life Technologies, A14635) and maintained for 4-6 days after transfection. The conditioned medium was partially purified by affinity chromatography and desalination. The triespecific proteins were subsequently polished by ion exchange or, alternatively, concentrated with Amicon Ultra centrifugal filtration units (EMD Millipore), applied to the Superdex 200 size exclusion medium (GE Healthcare) and resolved in a neutral buffer containing excipients. The cluster of fractions and the final purity were evaluated by SDS-PAGE and analytical SEC.
Affinity measures [0093] The affinities of molecules from all binding domains were measured by bi-layer inferometry using an Octet instrument.
[0094] PSMA affinities were measured by carrying the
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49/76 human PSMA-Fc protein (100 nM) in anti-human IgG biosensors for 120 seconds, followed by a parameter of 60 seconds, after which the associations were measured by incubating the tip of the sensor in a series of dilution of the specific molecules for 180 seconds, followed by dissociation for 50 seconds. The affinities of EGFR and CD3 were measured by loading human EGFR-Fc protein or CD3-Flag-Fc protein, respectively (100 nM) into anti-human IgG biosensors for 120 seconds, followed by a 60 second parameter, after which they were measurements by incubating the tip of the sensor in a series of dilutions of the specific molecules for 180 seconds, followed by dissociation for 300 seconds. Affinities with human serum albumin (HSA) were measured by loading biotinylated albumin into streptavidin biosensors, then following the same kinetic parameters as for CD3 affinity measurements. All steps were performed at 30 ° C in 0.25% barracks in phosphate buffered saline. Cytotoxicity assays [0095] A human T cell-dependent cell cytotoxicity (TDCC) assay was used to measure the ability of T-cell promoters, including triespecific molecules, to target T cells to kill tumor cells (Nazarian et al. 2015 J Biomol Screen. 20: 519-27). In this assay, T cells and target cancer cell line cells are mixed in a 10: 1 ratio in a 384 well plate and varying amounts of T cell couplers are added. After 48 hours, T cells are washed, leaving them bound to the target cells of the plate that were not killed by the T cells. To quantify the cells
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50/76 remaining viable, the CellTiter-Glo® Luminescent Cell Viability Ensio (Promega) is used. In some cases, the target cells are designed to express luciferase. In these cases, the viability of the target cells is assessed by performing a luminescent luciferase assay with the STEADYGLO® reagent (Promega), in which the viability is directly proportional to the amount of luciferase activity.
Stability assays [0096] The stability of triespecific binding proteins was evaluated at low concentrations in the presence of non-human primate serum. The triTACs were diluted to 33 pg / ml in Cinomolgos serum (BioReclamationIVT) and incubated for 2 days at 37 ° C or subjected to five freeze / thaw cycles. After treatment, the samples were evaluated in cytotoxicity tests (TDCC) and their remaining activity was compared with untreated standard solutions.
Xenograft assays [0097] The in vivo efficacy of specific binding proteins has been evaluated in xenograft experiments (Crown Bioscience, Taicang). NOD / SCID mice deficient in the common gamma chain (NCG, Model Animal Research Center of Nanjing University) were inoculated on day 0 with a mixture of human 5e6 22Rvl prostate cancer cells and 5e6 resting human T cells that were isolated from of healthy human donor. The mice were randomly assigned to three groups and treated with vehicle, 0.5 mg / kg PSMA TriTAC C324 or 0.5 mg / kg PSMA BiTE. Treatments were administered daily for
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51/76 days via i.v. bolus injection. The animals were checked daily for morbidity and mortality. Tumor volumes were determined twice a week with a caliper. The study ended after 30 days. PK assays [0098] The purpose of this study was to evaluate the pharmacokinetics of a single dose of binding-specific proteins after intravenous injection. Two experimentally inborn cynomolgus monkeys per group (1 male and 1 female) were administered through a slow bolus IV injection administered over approximately 1 minute. After administration of the dose, observations on the side of the cage were performed once a day and body weights were recorded weekly. Blood samples were collected and processed for serum for pharmacokinetic analysis up to 21 days after dose administration.
[0099] Concentrations of test articles were determined from monkey serum with an electroluminescent reading (Meso Scale Diagnostics, Rockville). 96-well plates with immobilized recombinant CD3 were used to capture the analyte. Detection was performed with recombinant sulfo-labeled PSMA on an MSD reader according to the manufacturer's instructions.
Example 2: Evaluation of the impact of CD3 affinity on the properties of triespecific molecules [00100] Triespecific molecules were studied with targeting PSMA with distinct CD3 binding domains to demonstrate the effects of altering affinity for CD3. A triespecific molecule targeting an exemplary PSMA is illustrated in Figure 1. Table 1 lists the
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52/76 affinity of each molecule for the three binding partners (PSMA, CD3, HSA). Affinities were measured by bi-layer interferometry using an Octet instrument (Pall Forté Bio). The reduced affinity of CD3 leads to a loss of potency in terms of T-cell-mediated cellular toxicity (Figures 2A-C). The pharmacokinetic properties of these triespecific molecules have been evaluated in cynomolgus monkeys. Molecules with high affinity for CD3 such as TriTAC C236 have a terminal half-life of approximately 90 hours (Figure 3). Despite the altered ability to bind CD3 to T cells, the terminal half-life of two molecules with different CD3 affinities shown in Figure 4 is very similar. However, the reduced affinity of CD3 seems to lead to a greater volume of distribution, which is consistent with the reduction in the sequestration of the triespecific molecule by T cells. There were no adverse clinical observations or changes in body weight observed during the study period.
Table 1: Binding affinities for human antigens and
Cinomolgos
Anti-KD valuePSMA (nM) Anti-KD valueAlbumin (nM) Anti-KD valueCD3e (nM) Human cino cino / hum ratio pHSA CSA cino / hum ratio Human cino cino / hum ratio C236 high affinity TriTAC tool 16, 3 0 0 22.7 25, 4 1, 1 6, 0 4.7 0.8 TriTACCD3 high affinity C324 17, 9 0 0 9, 8 9, 7 1 7.4 5, 8 0.8
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TriTAC CD3 tuned average of C339 13, 6 0 0 8.8 8.3 0, 9 40, 6 33, 6 0.8 TriTAC CD3 low tuned C325 15, 3 0 0 10, 1 9, 7 1 217 160 0.7
Example 3: Evaluation of the impact of PSMA affinity on the properties of triespecific molecules [00101] Tried-specific molecules targeting PSMA with distinct domains of binding to
PSMA to demonstrate the effects of changing affinity for PSMA. Table 2 lists the affinity of each molecule for the three binding partners (PSMA, CD3, HSA). The reduced affinity of PSMA leads to a loss of potency in terms of T-cell-mediated cellular toxicity (Figures 5A-C).
Table 2: Binding affinities for human antigens and Cinomolgos
Anti-PSMA KD value (nM) anti-Albumin KD value (nM) anti-CD3e KD value (nM) Huma-at the cino Cino / hum ratio pHSA CSA Cino / hum ratio Huma-at the cino Cino / h ratio um PSMA-TriTAC(p8) -C362 22.0 0 at 6, 6 6, 6 1.0 8.3 4.3 0.52 PSMA TriTAC (HDS) -C363 3, 7 540 146 7, 6 8.4 1, 1 8.0 5, 2 0.65 PSMATriTAC(HTS) -C364 0.15 663 4423 8.4 8, 6 1.0 7.7 3, 8 0.49
Example 4: In vivo efficiency of triespecific molecules
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54/76 targeting PSMA [00102] The C324 triespecific molecule targeting PSMA was evaluated for its ability to inhibit tumor growth in mice. For this experiment, immunocompromised mice reconstituted with human T cells were inoculated subcutaneously with human prostate tumor cells expressing PSMA (22Rvl) and treated daily for 10 days with 0.5 mg / kg i.v. of any BiTE or TriTAC molecules targeting PSMA. Tumor growth was measured to 30. Throughout the experiment, the triespecific molecule was able to inhibit tumor growth with an efficiency comparable to a BiTE molecule (Figure 6).
Example 5: Specificity of triespecific molecules [00103] In order to assess the specificity of TriTAC molecules targeting PSMA, their ability to induce T cells to kill tumor cells was tested with tumor cells that are PSMA negative (Figure 7A). A TriTAC molecule targeting EGFR served as a positive control, a TriTAC molecule targeting GFP as a negative control. All three TriTACs with different PSMA binding domains showed the expected activity against the PSMA positive cell line LNCaP (Figure 7B), but did not reach EC50s in the PSMA negative cell lines KMS12BM and OVCAR8 (Figures 7C and 7D). The EC50s are summarized in Table 3. At very high concentrations of TriTAC (> 1 nM), some limited off-target cell death can be seen for TriTACs C362 and C363, while C364 did not show significant cell death in any of the conditions tested .
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Table 3: Cell death activity of TriTAC molecules with antigen positive and negative tumor cell lines (EC50 [M])
TriTAC LNCaP KMS12BM OVCAR8 PSMA p8 TriTAC C362 13, 0 > 10,000 > 10,000 PSMA HDS TriTAC C363 6.2 > 10,000 > 10,000 PSMA HTS TriTAC C364 0.8 > 10,000 > 10,000 EGFR TriTAC C131 9, 4 > 10,000 6 GFP TriTAC C > 10,000 > 10,000 > 10,000
Example 6: Stress tests and protein stability [00104] Four triespecific molecules directing to PSMA were either incubated for 48 h in Cinomolgos serum in low concentrations (33.3 pg / ml) or subjected to five freeze / thaw cycles in serum Cinomolgos. After treatment, the bioactivity of the TriTAC molecules was evaluated in cell death assays and compared to samples without stress (positive control, Figure 8A-D). All molecules maintained most of their cell death activities. The TriTAC C362 was the most resistant to stress and did not appear to lose any activity under the conditions tested here.
Example 7: Xenograft tumor model [00105] The specific proteins targeting PSMA from the previous examples are evaluated in a xenograft model.
[00106] Male immunodeficient NCG mice are inoculated subcutaneously with 5 x 10 6 22Rvl cells on the right dorsal flank. When the tumors reach 100 to 200 mm 3 , the animals are allocated to 3 treatment groups. Groups 2 and 3 (8 animals each) are injected intraperitoneally with 1.5 x 10 7 activated human T cells. Three days later, the animals in Group 3 are subsequently
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56/76 treated with a total of 9 intravenous doses of 50 pg of specific protein binding to the PSMA antigen of Example 1 (qdx9d). Groups 1 and 2 are treated with vehicle only. Body weight and tumor volume are determined for 30 days.
[00107] Tumor growth in mice treated with the specific PSMA antigen-binding protein is expected to have significantly reduced growth compared to tumor growth in the respective vehicle-treated control group.
Example 8: Proof-of-Concept Clinical Trial Protocol for Administering the Specific PSMA Antigen-Binding Protein of Example 1 to Prostate Cancer Patients [00108] This is a Phase I / II clinical trial for the study of the specific protein of binding to the PSMA antigen of Example 1 as a treatment for prostate cancer.
[00109] Study Results:
[00110] Primary: maximum tolerated dose of triespecific proteins targeting PSMA from the previous examples.
[00111] Secondary: To determine whether the in vitro response of specific proteins targeting PSMA from the previous examples are associated with the clinical response.
[00112] Phase I [00113] The maximum tolerated dose (BAT) will be determined in phase I of the test.
1.1 The maximum tolerated dose (BAT) will be determined in phase I of the test.
1.2 Patients who meet the eligibility criteria will be included in the study for proteins
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57/76 triespecificas directing to PSMA from the previous examples.
1.3 The objective is to identify the highest dose of triespecific proteins directing to PSMA from the previous examples that can be safely administered without serious or uncontrollable side effects in the participants. The dose given will depend on the number of participants who were enrolled in the study before and how well the dose was tolerated. Not all participants will receive the same dose.
[00114] Phase II:
2.1 A subsequent phase II section will be addressed in BAT with the aim of determining whether therapy with specific protein therapy targeting PSMA from the previous examples results in at least a 20% response rate.
[00115] Primary outcome for phase II --- To determine whether the specific protein therapy targeting PSMA in the previous examples results in at least 20% of patients achieving a clinical response (shock response, minor response, partial response or response complete) [00116] Eligibility:
[00117] Histologically confirmed recent diagnosis of aggressive prostate cancer according to the current classification of the World Health Organization, from 2001 to 2007 [00118] Any stage of the disease.
[00119] Treatment with docetaxel and prednisone (surgery + / -).
[00120] Age 1 18 years
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58/76 [00121] Karnofsky performance condition> 50% or ECOG 0-2 performance condition.
[00122] Life expectancy> 6 weeks
Example 9: Activity of an exemplary PSMA antigen-binding protein (PSMA-directed TriTAC molecule) in redirected T cell death assays using a panel of cell lines expressing PSMA and T cells from different donors [00123] This study was conducted for demonstrate that the activity of the specific antigen-binding protein targeting exemplary PSMA is not limited to LNCaP cells or a single cell donor.
[00124] Redirected T cell death assays were performed using T cells from four different donors and human prostate cancer cell lines expressing PSMA VCaP, LNCaP, MDAPCa2b and 22Rvl. With one exception, the specific PSMA antigen-binding protein was able to target the death of these cancer cell lines using T cells from all donors with EC50 values of 0.2 to 1.5 pM, as shown in Table 4. With prostate cancer cell line 22 Rvl and Donor 24, little or no death was observed (data not shown). Donor 24 also resulted in only approximately 50% death of the MDAPCa2b cell line, whereas T cells from the other 3 donors resulted in almost complete death of this cell line (data not shown). Control trials showed that death by the specific PSMA antigen-binding protein was PSMA specific. No death was observed when cells expressing PSMA were treated with a protein
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59/76 try specifies control by targeting green fluorescent protein (GFP) instead of PSMA (data not shown). Likewise, the PSMA antigen-binding protein was inactive with cell lines that lack expression of PSMA, NCI-1563 and HCT116, also shown in Table 4.
Table 4: ECso Values of TDCC Trials with Six Lines
Human Cancer Cell Phones and Four T Cell Donors
Many different
Cell Line TDCC values EC50 (M) Donor 24 Donor 8144 Donor 72 Donor 41 LNCaP 1.5E-12 2.2E-13 3.6E-13 4.3E-13 MDAPCa2b 4.8E-12 4.1E-13 4.9E-13 6.5E-13 VCaP 6.4E-13 1.6E-13 2, OE-13 3.5E-13 22Rvl at 7.2E-13 1.4E-12 1.3E-12 HCT116 > 1, OE-8 > 1, OE-8 > 1, OE-8 > 1, OE-8 NCI-1563 > 1, OE-8 > 1, OE-8 > 1, OE-8 > 1, OE-8
Example 10: Stimulation of cytokine expression in an exemplary PSMA antigen-specific protein (TriTAC molecule targeting PSMA) in redirected T cell death assays [00125] This study was performed to demonstrate the activation of T cells by the triespecific protein of binding to the exemplary PSMA antigen during redirected T cell death assays by measuring cytokine secretion in the assay medium by activated T cells.
[00126] The conditioned media collected from redirected T cell death assays, as described above in Example 9, were analyzed for expression of the cytokines TNFa and IFNy. Cytokines were measured using AlphaLISA assays (Perkin-Elmer). Adding a titer of the PSMA antigen-binding protein to T cells from four different donors and four cell lines that express PSMA, LNCaP, VCaP, MDAPCa2b and 22Rvl resulted in levels
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60/76 increased TNF. Results for expression levels of
TNFa and IFNy expression in the conditioned medium are shown in Tables 5 and 6, respectively. The EC50 values for the expression induced by the PSMA antigen binding protein of these cytokines varied between 3 and 15 pM. Increased levels of cytokines were not seen with a specific control protein targeting GFP. Likewise, when the assays were performed with two cell lines that do not have PSMA expression, HCT116 and NCI-H1563, PSTA HTS TriTAC also did not increase the expression of TNFa or IFNy.
Table 5: EC50 Values for TNFα Expression in Media of Trispecific Binding Protein TDCC Assays
PSMA Antigen with Six Human Cancer Cell Lines and
T cells from four different donors
Cell Line Donor 24 Donor 8144 Donor 41 Donor LNCaP 4.9E-12 2.8E-12 4, OE-12 3.2E-12 VCaP 3.2E-12 2.9E-12 2.9E-12 2.9E-12 MDAPCa2b 2.1E-11 4, OE-12 5.5E-12 3.6E-12 22Rvl 8.9E-12 2.5E-12 4, OE-12 3.3E-12 HCT116 > lE-8 > lE-8 > lE-8 > lE-8 NCI-H1563 > lE-8 > lE-8 > lE-8 > lE-8
Table 6: EC50 Values for IFNy Expression in Medium
TDCC Assays for Trispecific Antigen-Binding Protein
PSMA with Six Human Cancer Cell Lines and Cells
T from Four Different Donors
Cell Line Donor 24 Donor 8144 Donor 41 Donor LNCaP 4.2E-12 4.2E-12 4.2E-12 2.8E-12 VCaP 5.1E-12 1.5E-11 3.4E-12 4.9E-12 MDAPCa2b 1.5E-11 5.8E-12 9.7E-12 3.5E-12 22Rvl 7.8E-12 3, OE-12 9.1E-12 3, OE-12 HCT116 > lE-8 > lE-8 > lE-8 > lE-8 NCI-H1563 > lE-8 > lE-8 > lE-8 > lE-8
Example 11: Activity of a specific antigen-binding protein
Exemplary PSMA (TriTAC
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61/76 targeting PSMA) in the redirected T cell death (TDCC) assay using cynomolgus monkey T cells [00127] This study was performed to test the ability of the exemplary PSMA antigen-binding protein to target monkey T cells cinomolgos to kill PSMA-expressing cell lines.
[00128] TDCC assays were established using peripheral blood mononuclear cells (PBMCs) from cynomolgus monkeys. Cino PBMCs were added to LNCaP cells in a 10: 1 ratio. The PSMA antigen-binding protein has been observed to redirect the killing of LNCaP by five PBMCs with an EC value of 11 pM. The result is shown in Figure 9A. To confirm these results, a second cell line, MDAPCa2b, was used and PBMC of a second cynomolgus monkey donor was tested. The redirected death of the target cells was observed with an ECso value of 2.2 pM. The result is shown in Figure 9B. Death was specific for the anti-PMSA arm of the PSMA antigen-binding protein, since death was not observed with a negative control-specific protein targeting GFP. These data demonstrate that the PSMA antigen-specific binding protein can target cinomolgus T cells to kill target cells that express human PSMA.
Example 12: Expression of T cell activation markers in redirecting T cell death assays with an exemplary trypspecific PSMA antigen-binding protein (TriTAC molecule targeting PSMA)
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62/76 [00129] This study was carried out to assess whether T cells were activated when the exemplary PSMA antigen-specific binding protein directed T cells to kill target cells.
[00130] The assays were created using conditions for the redirected T cell death assays described in the example above. T cell activation was assessed by measuring the expression of CD25 and CD69 on the surface of T cells using flow cytometry. The specific PSMA antigen-binding protein was added to a 10: 1 mixture of purified human T cells and the VCaP prostate cancer cell line. Upon addition of increasing amounts of the specific PSMA antigen-binding protein, increased expression of CD69 and expression of CD25 was observed, as shown in Figure 10. The ECso value was 0.3 pM for CD69 and 0.2 pM for CD25. A trypecific protein targeting GFP was included in these assays as a negative control, and little or no increase in CD69 or CD25 expression is seen with the trypecific protein targeting GFP, also shown in Figure 10.
Example 13: Stimulation of T cell proliferation by an exemplary PSMA antigen-specific binding protein (TriTAC molecule targeting PSMA) in the presence of target cells expressing PSMA [00131] This study was used as an additional method to demonstrate that the protein an exemplary PSMA antigen binding specific was able to activate T cells when redirected to kill target cells.
[00132] T cell proliferation assays were established using the conditions of the death assay
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Example 14: Death of TNC LNCaP cells redirected by PSMA antigen-binding proteins (TriTAC molecules targeting PSMA PH1T, PH and Z2)
[00133] This one study was accomplished for test the capacity in proteins tries specific in call from antigen PSMA specimens, owning at strings
established in SEQ ID Nos: 150, 151 and 152, to redirect T cells to kill the LNCaP cell line.
[00134] In TDCC assays, configure as described in the examples above, the TriTAC PSMA PH1T (SEQ ID No: 150) and PSMA PH1 TriTAC (SEQ ID NO: 151) proteins killing with EC 50 values of 25 and 20 pM, respectively, as shown in Figure 12A; and PSMA Z2 TriTAC protein-directed death (SEQ ID NO: 152) with an EC50 value of 0.8 pM, as shown in Figure 12B.
Table 7: CD3 Binding Domain Strings
SEQ IPAT THE: description String AA 1 Anti-CD3, clone 2B2 EVQLVESGGGLVQPGGSLKLSCAASGFTFNKYAINWVRQAPGKGLEWVARIRSKYNNYATYYADQVKDRFTISRDDSKNTAYLQMNNLKTEDTAVYYCVRHANFGNSYISYWAYWGQGTLVTVSSGGGGSGGGGSGGGGSQTWTQEPSLTVSPGGTVTLTCASSTGAVTSGNYPNWVQQKPGQA
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SEQ IDAT THE: description String AA PRGLIGGTKFLVPGTPARFSGSLLGGKAALTLSGVQPEDEAEYYCTLWYSNRWVFGGGTKLTVL 2 Anti-CD3, clone 9F2 EVQLVESGGGLVQPGGSLKLSCAASGFEFNKYAMNWV RQAPGKGLEWVARIRSKYNKYATYYADSVKDRFTISR DDSKNTAYLQMNNLKTEDTAVYYCVRHGNFGNSGISLGTVGGGGGSLTVSPGGTVTLTCGSSFGAVTSGNYPNWVQQKPGQA PRGLIGGTKFLAPGTPARFSGSLLGGKAALTLSGVQP EDEAEYYCVLWYDNRWVFGGGTKLTVL 3 Anti-CD3, clone 5A2 EVQLVESGGGLVQPGGSLKLSCAASGFTFNKYAMNWV RQAPGKGLEWVARIRSKYNNYATYYADSVKDRFTISR DDSKNTAYLQMNNLKTEDTAVYYCVRHGNFGNSHISY WAYWGGGGSGSGGSLTVSPGGTVTLTCGSSTGYVTSGNYPNWVQQKPGQA PRGLIGGTSFLAPGTPARFSGSLLGGKAALTLSGVQP EDEAEYYCVLWYSNRWIFGGGTKLTVL 4 Anti-CD3, clone 6A2 EVQLVESGGGLVQPGGSLKLSCAASGFMFNKYAMNWV RQAPGKGLEWVARIRSKSNNYATYYADSVKDRFTISR DDSKNTAYLQMNNLKTEDTAVYYCVRHGNFGNSTISVWGGGGTGSGGGGSLTVSPGGTVTLTCGSSFGAVTSGNYPNWVQQKPGQA PRGLIGGTKLLAPGTPARFSGSLLGGKAALTLSGVQP EDEAEYYCVLWYSNSWVFGGGTKLTVL 5 Anti-CD3, clone 2D2 EVQLVESGGGLVQPGGSLKLSCAASGFTFNTYAMNWV RQAPGKGLEWVARIRSKYNNYATYYKDSVKDRFTISR DDSKNTAYLQMNNLKTEDTAVYYCVRHGNFGNSPISY WAYWGQGTLVTVSSGGGGSGGGGSGGGGSQTWTQEP SLTVSPGGTVTLTCGSSTGAVVSGNYPNWVQQKPGQA PRGLIGGTEFLAPGTPARFSGSLLGGKAALTLSGVQP EDEAEYYCVLWYSNRWVFGGGTKLTVL 6 Anti-CD3, clone 3F2 EVQLVESGGGLVQPGGSLKLSCAASGFTYNKYAMNWV RQAPGKGLEWVARIRSKYNNYATYYADEVKDRFTISR DDSKNTAYLQMNNLKTEDTAVYYCVRHGNFGNSPISY WAYWGQGTLVTVSSGGGGSGGGGSGGGGSQTWTQEP SLTVSPGGTVTLTCGSSKGAVTSGNYPNWVQQKPGQA PRGLIGGTKELAPGTPARFSGSLLGGKAALTLSGVQP EDEAEYYCTLWYSNRWVFGGGTKLTVL 7 Anti-CD3, clone 1A2 EVQLVESGGGLVQPGGSLKLSCAASGNTFNKYAMNWV RQAPGKGLEWVARIRSKYNNYETYYADSVKDRFTISR DDSKNTAYLQMNNLKTEDTAVYYCVRHTNFGNSYISY WAYWGGGSGGGGGSGSLTVSPGGTVTLTCGSSTGAVTSGYYPNWVQQKPGQA PRGLIGGTYFLAPGTPARFSGSLLGGKAALTLSGVQP EDEAEYYCVLWYSNRWVFGGGTKLTVL 8 Anti-CD3, clone1C2 EVQLVESGGGLVQPGGSLKLSCAASGFTFNNYAMNWV RQAPGKGLEWVARIRSKYNNYATYYADAVKDRFTISR DDSKNTAYLQMNNLKTEDTAVYYCVRHGNFGNSQISY WAYWGGGGTGSGGGGGTGSSLTVSPGGTVTLTCGSSTGAVTDGNYPNWVQQKPGQA PRGLIGGIKFLAPGTPARFSGSLLGGKAALTLSGVQP EDEAEYYCVLWYSNRWVFGGGTKLTVL 9 Anti-CD3, clone 2E4 EVQLVESGGGLVQPGGSLKLSCAASGFTFNKYAVNWVRQAPGKGLEWVARIRSKYNNYATYYADSVKDRFTISR
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SEQ IDAT THE: description String AA DDSKNTAYLQMNNLKTEDTAVYYCVRHGNFGNSYISYWAYWGQGTLVTVSSGGGGSGGGGSGGGGSQTWTQEPSLTVSPGGTVTLTCGESTGAVTSGNYPNWVQQKPGQAPRGLIGGTKILAPGTPARFSGSLLGGKAALTLSGVQPEDEAEYYCVLWYSNRWVFGGGTKLTVL 10 Anti-CD3, clone 10E4 EVQLVESGGGLVQPGGSLKLSCAASGFTFNKYPMNWV RQAPGKGLEWVARIRSKYNNYATYYADSVKDRFTISR DDSKNTAYLQMNNLKNEDTAVYYCVRHGNFNNSYISY WAYWGQGTGSGGGGGSLTVSPGGTVTLTCGSSTGAVTKGNYPNWVQQKPGQA PRGLIGGTKMLAPGTPARFSGSLLGGKAALTLSGVQP EDEAEYYCALWYSNRWVFGGGTKLTVL 11 Anti-CD3, clone 2H2 EVQLVESGGGLVQPGGSLKLSCAASGFTFNGYAMNWV RQAPGKGLEWVARIRSKYNNYATYYADEVKDRFTISR DDSKNTAYLQMNNLKTEDTAVYYCVRHGNFGNSPISY WAYWGQGTLVTVSSGGGGSGGGGSGGGGSQTWTQEP SLTVSPGGTVTLTCGSSTGAVVSGNYPNWVQQKPGQA PRGLIGGTEFLAPGTPARFSGSLLGGKAALTLSGVQP EDEAEYYCVLWYSNRWVFGGGTKLTVL 12 Anti-CD3, clone 2A4 EVQLVESGGGLVQPGGSLKLSCAASGNTFNKYAMNWV RQAPGKGLEWVARIRSKYNNYATYYADSVKDRFTISR DDSKNTAYLQMNNLKTEDTAVYYCVRHGNFGDSYISY WAYWGGGSGGGGGGGGSLTVSPGGTVTLTCGSSTGAVTHGNYPNWVQQKPGQA PRGLIGGTKVLAPGTPARFSGSLLGGKAALTLSGVQP EDEAEYYCVLWYSNRWVFGGGTKLTVL 13 Anti-CD3, clone 10B2 EVQLVESGGGLVQPGGSLKLSCAASGFTFNNYAMNWV RQAPGKGLEWVARIRSGYNNYATYYADSVKDRFTISR DDSKNTAYLQMNNLKTEDTAVYYCVRHGNFGNSGISLGGGGGGGGGGGSLTVSPGGTVTLTCGSYTGAVTSGNYPNWVQQKPGQA PRGLIGGTKFNAPGTPARFSGSLLGGKAALTLSGVQP EDEAEYYCVLWYANRWVFGGGTKLTVL 14 Anti-CD3, clone 1G4 EVQLVESGGGLVQPGGSLKLSCAASGFEFNKYAMNWV RQAPGKGLEWVARIRSKYNNYETYYADSVKDRFTISR DDSKNTAYLQMNNLKTEDTAVYYCVRHGNFGNSGISLSGGGGGGSLTVSPGGTVTLTCGSSSGAVTSGNYPNWVQQKPGQA PRGLIGGTKFGAPGTPARFSGSLLGGKAALTLSGVQP EDEAEYYCVLWYSNRWVFGGGTKLTVL 15 anti-CD3 wt EVQLVESGGGLVQPGGSLKLSCAASGFTFNKYAMNWV RQAPGKGLEWVARIRSKYNNYATYYADSVKDRFTISR DDSKNTAYLQMNNLKTEDTAVYYCVRHGNFGNSGISLGVGGGGGGGSLTVSPGGTVTLTCGSSTGAVTSGNYPNWVQQKPGQA PRGLIGGTKFLAPGTPARFSGSLLGGKAALTLSGVQP EDEAEYYCVLWYSNRWVFGGGTKLTVL 16 wt anti-CD3 HCCDR1 GFTFNKYAMN 17 wt anti-CD3 HCCDR2 RIRSKYNNYATYYADSVK
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SEQ IDAT THE: description String AA 18 wt anti-CD3 HCCDR3 HGNFGNSYISYWAY 19 anti-CD3 LC wtCDR1 GSSTGAVTSGNYPN 20 anti-CD3 LC wtCDR2 GTKFLAP 21 anti-CD3 LC wtCDR3 VLWYSNRWV 22 HC CDR1 variant 1 GNTFNKYAMN 23 HC CDR1 variant 2 GFEFNKYAMN 24 HC CDR1 variant 3 GFMFNKYAMN 25 HC CDR1 variant 4 GFTYNKYAMN 26 HC CDR1 variant 5 GFTFNNYAMN 27 HC CDR1 variant 6 GFTFNGYAMN 28 HC CDR1 variant 7 GFTFNTYAMN 29 HC CDR1 variant 8 GFTFNEYAMN 30 HC CDR1 variant 9 GFTFNKYPMN 31 HC CDR1 variant 10 GFTFNKYAVN 32 HC CDR1 variant 11 GFTFNKYAIN 33 HC CDR1 variant 12 GFTFNKYALN 34 HC CDR2 variant 1 RIRSGYNNYATYYADSVK 35 HC CDR2 variant 2 RIRSKSNNYATYYADSVK 36 HC CDR2 variant 3 RIRSKYNKYATYYADSVK 37 HC CDR2 variant 4 RIRSKYNNYETYYADSVK 38 HC CDR2 variant 5 RIRSKYNNYATEYADSVK 39 HC CDR2 variant 6 RIRSKYNNYATYYKDSVK
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SEQ IDAT THE: description String AA 40 HC CDR2 variant 7 RIRSKYNNYATYYADEVK 41 HC CDR2 variant 8 RIRSKYNNYATYYADAVK 42 HC CDR2 variant 9 RIRSKYNNYATYYADQVK 43 HC CDR2 variant 10 RIRSKYNNYATYYADDVK 44 HC CDR3 variant 1 HANFGNSYISYWAY 45 HC CDR3 variant 2 HTNFGNSYISYWAY 46 HC CDR3 variant 3 HGNFNNSYISYWAY 47 HC CDR3 variant 4 HGNFGDSYISYWAY 48 HC CDR3 variant 5 HGNFGNSHISYWAY 49 HC CDR3 variant 6 HGNFGNSPISYWAY 50 HC CDR3 variant 7 HGNFGNSQISYWAY 51 HC CDR3 variant 8 HGNFGNSLISYWAY 52 HC CDR3 variant 9 HGNFGNSGISYWAY 53 HC CDR3 variant 10 HGNFGNSYISYWAT 54 LC CDR1 variant 1 ASSTGAVTSGNYPN 55 LC CDR1 variant 2 GESTGAVTSGNYPN 56 LC CDR1 variant 3 GSYTGAVTSGNYPN 57 LC CDR1 variant 4 GSSFGAVTSGNYPN 58 LC CDR1 variant 5 GSSKGAVTSGNYPN 59 LC CDR1 variant 6 GSSSGAVTSGNYPN 60 LC CDR1 variant 7 GSSTGYVTSGNYPN 61 LC CDR1 variant 8 GSSTGAWSGNYPN
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SEQ IDAT THE: description String AA 62 LC CDR1 variant 9 GSSTGAVTDGNYPN 63 LC CDR1 variant 10 GSSTGAVTKGNYPN 64 LC CDR1 variant 11 GSSTGAVTHGNYPN 65 LC CDR1 variant 12 GSSTGAVTVGNYPN 66 LC CDR1 variant 13 GSSTGAVTSGYYPN 67 LC CDR2 variant 1 GIKFLAP 68 LC CDR2 variant 2 GTEFLAP 69 LC CDR2 variant 3 GTYFLAP 70 LC CDR2 variant 4 GTSFLAP 71 LC CDR2 variant 5 GTNFLAP 72 LC CDR2 variant 6 GTKLLAP 73 LC CDR2 variant 7 GTKELAP 74 LC CDR2 variant 8 GTKILAP 75 LC CDR2 variant 9 GTKMLAP 76 LC CDR2 variant 10 GTKVLAP 77 LC CDR2 variant 11 GTKFNAP 78 LC CDR2 variant 12 GTKFGAP 79 LC CDR2 variant 13 GTKFLVP 80 LC CDR3 variant 1 TLWYSNRWV 81 LC CDR3 variant 2 ALWYSNRWV 82 LC CDR3 variant 3 VLWYDNRWV 83 LC CDR3 variant 4 VLWYANRWV
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SEQ IPAT THE: description String AA 84 LC CDR3 variant 5 VLWYSNSWV 85 LC CDR3 variant 6 VLWYSNRWI 86 LC CDR3 variant 7 VLWYSNRWA 87 Anti-CD3, clone 2G5 EVQLVESGGGLVQPGGSLKLSCAASGFTFNKYALNWV RQAPGKGLEWVARIRSKYNNYATEYADSVKDRFTISR DDSKNTAYLQMNNLKTEDTAVYYCVRHGNFGNSPISY WAYWGQGTLVTVSSGGGGSGGGGSGGGGSQTWTQEP SLTVSPGGTVTLTCGSSTGAVTSGNYPNWVQQKPGQA PRGLIGGTNFLAPGTPERFSGSLLGGKAALTLSGVQP EDEAEYYCVLWYSNRWAFGGGTKLTVL 88 Anti-CD3, clone 8A5 EVQLVESGGGLVQPGGSLKLSCAASGFTFNEYAMNWVRQAPGKGLEWVARIRSKYNNYATYYADDVKDRFTISRDDSKNTAYLQMNNLKTEDTAVYYCVRHGNFGNSGISYWAYWGQGTLVTVSSGGGGSGGGGSGGGGSQTWTQEP SLTVSPGGTVTLTCGSSTGAVTVGNYPNWVQQKPGQA PRGLIGGTEFLAPGTPARFSGSLLGGKAALTLSGVQP EDEAEYYCVLWYSNG
Table 8: HSA Binding Domain Strings
SEQ IPAT THE: description String AA 89 Anti-HSA sdAb clone 6C EVQLVESGGGLVQPGNSLRLSCAASGFTFSRFGMSWVRQAPGKGLEWVSSISGSGSDTLYADSVKGRFTISRDNAKTTLYLQMNSLRPEDTAVYYCTIGGSLSRSSQGTLVTVSS 90 Anti-HSA sdAb clone 7A EVQLVESGGGLVQPGNSLRLSCAASGFTFSKFGMSWVRQAPGKGLEWVSSISGSGADTLYADSLKGRFTISRDNAKTTLYLQMNSLRPEDTAVYYCTIGGSLSKSSQGTLVTVSS 91 Anti-HSA sdAb clone 7G EVQLVESGGGLVQPGNSLRLSCAASGFTYSSFGMSWVRQAPGKGLEWVSSISGSGSDTLYADSVKGRFTISRDNAKTTLYLQMNSLRPEDTAVYYCTIGGSLSKSSQGTLVTVSS 92 Anti-HSA sdAb clone 8H EVQLVESGGGLVQPGNSLRLSCAASGFTFSKFGMSWVRQAPGKGLEWVSSISGSGTDTLYADSVKGRFTISRDNAKTTLYLQMNSLRPEDTAVYYCTIGGSLSRSSQGTLVTVSS 93 Anti-HSA sdAb clone 9A EVQLVESGGGLVQPGNSLRLSCAASGFTFSRFGMSWVRQAPGKGLEWVSSISGSGSDTLYADSVKGRFTISRDNAKTTLYLQMNSLRPEDTAVYYCTIGGSLSKSSQGTLVTVSS 94 Anti-HSA sdAb clone 10G EVQLVESGGGLVQPGNSLRLSCAASGFTFSKFGMSWVRQAPGKGLEWVSSISGSGRDTLYADSVKGRFTISRDNAKTTLYLQMNSLRPEDTAVYYCTIGGSLSVSSQGTLVTVSS 95 anti-HSA wt EVQLVESGGGLVQPGNSLRLSCAASGFTFSSFGMSWVRQAPGKGLEWVSSISGSGSDTLYADSVKGRFTISRDN
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SEQ IPAT THE: description String AA AKTTLYLQMNSLRPEDTAVYYCTIGGSLSRSSQGTLV TVSS 96 anti-HSA wtCDR1 GFTFSSFGMS 97 anti-HSA wtCDR2 SISGSGSDTLYADSVK 98 anti-HSACDR3 wt GGSLSR 99 CDR1 variant 1 GFTFSRFGMS 100 CDR1 variant 2 GFTFSKFGMS 101 CDR1 variant 3 GFTYSSFGMS 102 CDR2 variant 1 SISGSGADTLYADSLK 103 CDR2 variant 2 SISGSGTDTLYADSVK 104 CDR2 variant 3 SIS GS GRDT LYAD SVK 105 CDR2 variant 4 SISGSGSDTLYAESVK 106 CDR2 variant 5 SISGSGTDTLYAESVK 107 CDR2 variant 6 SIS GS GRDT LYAE SVK 108 CDR3 variant 1 GGSLSK 109 CDR3 variant 2 GGSLSV 110 Anti-HSA sdAb clone 6CE EVQLVESGGGLVQPGNSLRLSCAASGFTFSRFGMSWVRQAPGKGLEWVSSISGSGSDTLYAESVKGRFTISRDNAKTTLYLQMNSLRPEDTAVYYCTIGGSLSRSSQGTLVTVSS 111 Anti-HSA sdAb clone 8HE EVQLVESGGGLVQPGNSLRLSCAASGFTFSKFGMSWVRQAPGKGLEWVSSISGSGTDTLYAESVKGRFTISRDNAKTTLYLQMNSLRPEDTAVYYCTIGGSLSRSSQGTLVTVSS 112 Anti-HSA sdAb clone 10GE EVQLVESGGGLVQPGNSLRLSCAASGFTFSKFGMSWVRQAPGKGLEWVSSISGSGRDTLYAESVKGRFTISRDNAKTTLYLQMNSLRPEDTAVYYCTIGGSLSVSSQGTLVTVSS
Table 9: PSMA Binding Domain Strings
SEQ IPAT THE: description String AA 113 anti-PSMA wt EVQLVESGGGLVQPGGSLTLSCAASRFMISEYSMHWVRQAPGKGLEWVSTINPAGTTDYAESVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCDGYGYRGQGTQVTVSS 114 CDR1 variant 1 RFMISEYHMH 115 CDR1 variant 2 RFMISPYSMH 116 CDR1 variant 3 RFMISPYHMH 117 CDR2 variant 1 DINPAGTTDYAESVKG 118 CDR2 variant 2 TINPAKTTDYAESVKG 119 CDR2 variant 3 TINPAGQTDYAESVKG 120 CDR2 variant 4 TINPAGTTDYAEYVKG 121 CDR2 variant 5 DINPAKTTDYAESVKG 122 CDR2 variant 6 DINPAGQTDYAESVKG 123 CDR2 variant 7 DINPAGTTDYAEYVKG 124 CDR3 variant 1 DSYGY
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SEQ IPAT THE: description String AA 125 CDR1 variant 4 RFMISEYSMH 126 CDR2 variant 8 TINPAGTTDYAESVKG 127 CDR3 variant 2 DGYGY 128 Anti-PSMA clone1 EVQLVESGGGLVQPGGSLRLSCAASRFMISEYSMHWVRQAPGKGLEWVSTINPAGTTDYAESVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYYCDGYGYRGQGTLVTVSS 129 Anti-PSMA clone2 EVQLVESGGGLVQPGGSLRLSCAASRFMISEYHMHWVRQAPGKGLEWVSDINPAGTTDYAESVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYYCDSYGYRGQGTLVTVSS 130 Anti-PSMA clone3 EVQLVESGGGLVQPGGSLRLSCAASRFMISEYHMHWVRQAPGKGLEWVSTINPAGTTDYAESVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYYCDSYGYRGQGTLVTVSS 131 Anti-PSMA clone4 EVQLVESGGGLVQPGGSLRLSCAASRFMISEYSMHWVRQAPGKGLEWVSTINPAKTTDYAESVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYYCDSYGYRGQGTLVTVSS 132 Anti-PSMA clone5 EVQLVESGGGLVQPGGSLRLSCAASRFMISPYSMHWVRQAPGKGLEWVSTINPAGTTDYAESVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYYCDGYGYRGQGTLVTVSS 133 Anti-PSMA clone6 EVQLVESGGGLVQPGGSLRLSCAASRFMISEYSMHWVRQAPGKGLEWVSTINPAGQTDYAESVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYYCDGYGYRGQGTLVTVSS 134 Anti-PSMA clone7 EVQLVESGGGLVQPGGSLRLSCAASRFMISEYSMHWVRQAPGKGLEWVSTINPAGTTDYAEYVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYYCDGYGYRGQGTLVTVSS 135 Anti-PSMA clone8 EVQLVESGGGLVQPGGSLRLSCAASRFMISEYHMHWVRQAPGKGLEWVSDINPAKTTDYAESVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYYCDSYGYRGQGTLVTVSS 136 Anti-PSMA clone9 EVQLVESGGGLVQPGGSLRLSCAASRFMISPYHMHWVRQAPGKGLEWVSDINPAGTTDYAESVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYYCDSYGYRGQGTLVTVSS 137 Anti-PSMA clone10 EVQLVESGGGLVQPGGSLRLSCAASRFMISEYHMHWVRQAPGKGLEWVSDINPAGQTDYAESVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYYCDSYGYRGQGTLVTVSS 138 Anti-PSMA clone11 EVQLVESGGGLVQPGGSLRLSCAASRFMISEYHMHWVRQAPGKGLEWVSDINPAGTTDYAEYVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYYCDSYGYRGQGTLVTVSS 139 Anti-PSMA clone12 EVQLVESGGGLVQPGGSLTLSCAASRFMISEYHMHWVRQAPGKGLEWVSDINPAGTTDYAESVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCDSYGYRGQGTQVTVSS 140 Anti-PSMA clone13 EVQLVESGGGLVQPGGSLTLSCAASRFMISEYHMHWVRQAPGKGLEWVSTINPAGTTDYAESVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCDSYGYRGQGTQVTVSS
Table 10: Trispecific Protein Sequences Targeting PSMA
SEQ IP NO: C— Number Construction Sequence 141 C00324 PSMATriTAC CD3 EVQLVESGGGLVQPGGSLTLSCAASRFMISEYSMHWVRQAPGKGLEWVSTINPAGTTDYAESVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCDGYGYRG
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SEQIDAT THE: C— Number Construction Sequence high affinity QGTQVTVSSGGGGSGGGSEVQLVESGGGLVQPGN SLRLSCAASGFTFSKFGMSWVRQAPGKGLEWVSS IS GS DRG T Y L T AD SVKGRF TISRDNAKT LY LQMN SLRPEDTAVYYCTIGGSLSVSSQGTLVTVSSGGG GSGGGSEVQLVESGGGLVQPGGSLKLSCAASGFT FNKYAINWVRQAPGKGLEWVARIRSKYNNYATYY ADQVKDRFTISRDDSKNTAYLQMNNLKTEDTAVY YCVRHANFGNSYISYWAYWGQGTLVTVSSGGGGS GGGGSGGGGSQTWTQEPSLTVSPGGTVTLTCAS STGAVTSGNYPNWVQQKPGQAPRGLIGGTKFLVP GTPARFSGSLLGGKAALTLSGVQPEDEAEYYCTL WYSNRWVFGGGTKLTVLHHHHHH 142 C00339 PSMATriTAC CD3 medium affinity EVQLVESGGGLVQPGGSLTLSCAASRFMISEYSM HWVRQAPGKGLEWVSTINPAGTTDYAESVKGRFT ISRDNAKNTLYLQMNSLKPEDTAVYYCDGYGYRG QGTQVTVSSGGGGSGGGSEVQLVESGGGLVQPGN SLRLSCAASGFTFSKFGMSWVRQAPGKGLEWVSS IS GS DRG T T Lyad SVKGRF TISRDNAKT LY LQMN SLRPEDTAVYYCTIGGSLSVSSQGTLVTVSSGGG GSGGGSEVQLVESGGGLVQPGGSLKLSCAASGFT FNNYAMNWVRQAPGKGLEWVARIRSGYNNYATYY ADSVKDRFTISRDDSKNTAYLQMNNLKTEDTAVY YCVRHGNFGNSYISYWAYWGQGTLVTVSSGGGGS GGGGSGGGGSQTWTQEPSLTVSPGGTVTLTCGS YTGAVTSGNYPNWVQQKPGQAPRGLIGGTKFNAP GTPARFSGSLLGGKAALTLSGVQPEDEAEYYCVL WYANRWVFGGGTKLTVLHHHHHH 143 C00325 PSMATriTAC CD3 low affinity EVQLVESGGGLVQPGGSLTLSCAASRFMISEYSM HWVRQAPGKGLEWVSTINPAGTTDYAESVKGRFT ISRDNAKNTLYLQMNSLKPEDTAVYYCDGYGYRG QGTQVTVSSGGGGSGGGSEVQLVESGGGLVQPGN SLRLSCAASGFTFSKFGMSWVRQAPGKGLEWVSS IS GS DRG T T Lyad SVKGRF TISRDNAKT LY LQMN SLRPEDTAVYYCTIGGSLSVSSQGTLVTVSSGGG GSGGGSEVQLVESGGGLVQPGGSLKLSCAASGFE FNKYAMNWVRQAPGKGLEWVARIRSKYNNYETYY ADSVKDRFTISRDDSKNTAYLQMNNLKTEDTAVY YCVRHGNFGNSLISYWAYWGQGTLVTVSSGGGGS GGGGSGGGGSQTWTQEPSLTVSPGGTVTLTCGS SSGAVTSGNYPNWVQQKPGQAPRGLIGGTKFGAP GTPARFSGSLLGGKAALTLSGVQPEDEAEYYCVL WYSNRWVFGGGTKLTVLHHHHHH 144 C00236 ToolPSMA TriTAC EVQLVESGGGLVQPGGSLTLSCAASRFMISEYSMHWVRQAPGKGLEWVSTINPAGTTDYAESVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCDGYGYRGQGTQVTVSSGGGGSGGGSEVQLVESGGGLVQPGNSLRLSCAASGFTFSSFGMSWVRQAPGKGLEWVSSISGSGSDTLYADSVKGRFTISRDNAKTTLYLQMNSLRPEDTAVYYCTIGGSLSRSSQGTLVTVSSGGGGSGGGSEVQLVESGGGLVQPGGSLKLSCAASGFTFNKYAMNWVRQAPGKGLEWVARIRSKYNNYATYYADSVKDRFTISRDDSKNTAYLQMNNLKTEDTAVY
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SEQIDAT THE: C— Number Construction Sequence YCVRHGNFGNSYISYWAYWGQGTLVTVSSGGGGSGGGGSGGGGSQTWTQEPSLTVSPGGTVTLTCGSSTGAVTSGNYPNWVQQKPGQAPRGLIGGTKFLAPGTPARFSGSLLGGKAALTLSGVQPEDEAEYYCVLWYSNRWVFGGGTKLTVLHHHHHH 145 C00362 PSMA p8 TriTAC EVQLVESGGGLVQPGGSLRLSCAASRFMISEYSM HWVRQAPGKGLEWVSTINPAGTTDYAESVKGRFT ISRDNAKNTLYLQMNSLRAEDTAVYYCDGYGYRG QGTLVTVSSGGGGSGGGSEVQLVESGGGLVQPGN SLRLSCAASGFTFSKFGMSWVRQAPGKGLEWVSS IS GS DRG T T Lyad SVKGRF TISRDNAKT LY LQMN SLRPEDTAVYYCTIGGSLSVSSQGTLVTVSSGGG GSGGGSEVQLVESGGGLVQPGGSLKLSCAASGFT FNKYAINWVRQAPGKGLEWVARIRSKYNNYATYY ADQVKDRFTISRDDSKNTAYLQMNNLKTEDTAVY YCVRHANFGNSYISYWAYWGQGTLVTVSSGGGGS GGGGSGGGGSQTWTQEPSLTVSPGGTVTLTCAS STGAVTSGNYPNWVQQKPGQAPRGLIGGTKFLVP GTPARFSGSLLGGKAALTLSGVQPEDEAEYYCTL WYSNRWVFGGGTKLTVLHHHHHH 146 C00363 PSMA HDSTriTACC363 EVQLVESGGGLVQPGGSLTLSCAASRFMISEYHM HWVRQAPGKGLEWVSDINPAGTTDYAESVKGRFT ISRDNAKNTLYLQMNSLKPEDTAVYYCDSYGYRG QGTQVTVSSGGGGSGGGSEVQLVESGGGLVQPGN SLRLSCAASGFTFSKFGMSWVRQAPGKGLEWVSS IS GS DRG T T Lyad SVKGRF TISRDNAKT LY LQMN SLRPEDTAVYYCTIGGSLSVSSQGTLVTVSSGGG GSGGGSEVQLVESGGGLVQPGGSLKLSCAASGFT FNKYAINWVRQAPGKGLEWVARIRSKYNNYATYY ADQVKDRFTISRDDSKNTAYLQMNNLKTEDTAVY YCVRHANFGNSYISYWAYWGQGTLVTVSSGGGGS GGGGSGGGGSQTWTQEPSLTVSPGGTVTLTCAS STGAVTSGNYPNWVQQKPGQAPRGLIGGTKFLVP GTPARFSGSLLGGKAALTLSGVQPEDEAEYYCTL WYSNRWVFGGGTKLTVLHHHHHH 147 C00364 PSMA HTS TriTAC C364 EVQLVESGGGLVQPGGSLTLSCAASRFMISEYHM HWVRQAPGKGLEWVSTINPAGTTDYAESVKGRFT ISRDNAKNTLYLQMNSLKPEDTAVYYCDSYGYRG QGTQVTVSSGGGGSGGGSEVQLVESGGGLVQPGN SLRLSCAASGFTFSKFGMSWVRQAPGKGLEWVSS IS GS DRG T T Lyad SVKGRF TISRDNAKT LY LQMN SLRPEDTAVYYCTIGGSLSVSSQGTLVTVSSGGG GSGGGSEVQLVESGGGLVQPGGSLKLSCAASGFT FNKYAINWVRQAPGKGLEWVARIRSKYNNYATYY ADQVKDRFTISRDDSKNTAYLQMNNLKTEDTAVY YCVRHANFGNSYISYWAYWGQGTLVTVSSGGGGS GGGGSGGGGSQTWTQEPSLTVSPGGTVTLTCAS STGAVTSGNYPNWVQQKPGQAPRGLIGGTKFLVP GTPARFSGSLLGGKAALTLSGVQPEDEAEYYCTL WYSNRWVFGGGTKLTVLHHHHHH 148 C00298 PSMA BiTE QVQLVESGGGLVKPGESLRLSCAASGFTFSDYYMYWVRQAPGKGLEWVAIISDGGYYTYYSDIIKGRF
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Ί4 / Ί6
SEQIDAT THE: C— Number Construction Sequence TISRDNAKNSLYLQMNSLKAEDTAVYYCARGFPL LRHGAMDYWGQGTLVTVSSGGGGSGGGGSGGGGS DIQMTQ SP S LSASVGDRVTIT CKASQNVD TNVA WYQQKPGQAPKSLIYSASYRYSDVPSRFSGSASG TDFTLTISSVQSEDFATYYCQQYDSYPYTFGGGT KLEIKSGGGGSEVQLVESGGGLVQPGGSLKLSCA ASGFTFNKYAMNWVRQAPGKGLEWVARIRSKYNN YATYYADSVKDRFTISRDDSKNTAYLQMNNLKTE DTAVYYCVRHGNFGNSYISYWAYWGQGTLVTVSS GGGGSGGGGSGGGGSQTVVTQEPSLTVSPGGTVT LTCGSSTGAVTSGNYPNWVQQKPGQAPRGLIGGT KFLAPGTPARFSGSLLGGKAALTLSGVQPEDEAE YYCVLWYSNRWVFGGGTKLTVLHHHHHH 149 C00131 EGFR TriTAC QVKLEESGGGSVQTGGSLRLTCAASGRTSRSYGM GWFRQAP GKE RE FVS GISWRGD S T GYAD SVKGRF TISRDNAKNTVDLQMNSLKPEDTAIYYCAAAAGS AWYGTLYEYDYWGQGTQVTVSSGGGGSGGGSEVQ LVESGGGLVQPGNSLRLSCAASGFTFSSFGMSWV RQAPGKGLEWVSSISGSGSDTLYADSVKGRFTIS RDNAKTTLYLQMNSLRPEDTAVYYCTIGGSLSRS SQGTLVTVSSGGGGSGGGSEVQLVESGGGLVQPG GSLKLSCAASGFTFNKYAMNWVRQAPGKGLEWVA RIRSKYNNYATYYADSVKDRFTISRDDSKNTAYL QMNNLKTEDTAVYYCVRHGNFGNSYISYWAYWGQ GTLVTVSSGGGGSGGGGSGGGGSQTVVTQEPSLT VSPGGTVTLTCGSSTGAVTSGNYPNWVQQKPGQA PRGLIGGTKFLAPGTPARFSGSLLGGKAALTLSG VQPEDEAEYYCVLWYSNRWVFGGGTKLTVLHHHH HH 150 C00457 PSMA PH1TTriTAC Q VQ VE L S G G GG WQ AGR SLTLSCAYS VT VY VN RM GWFRQAP GKEREFVANINWS GNNRDYAD SVRGRF TISRDNSKNTLYLQMNSLRAEDTAVYYCASEKPG RLGEYDYGSQGTLVTVSSGGGGSGGGSEVQLVES GGGLVQPGNSLRLSCAASGFTFSKFGMSWVRQAP GKGLEWVSSISGSGRDTLYADSVKGRFTISRDNA KTTLYLQMNSLRPEDTAVYYCTIGGSLSVSSQGT LVTVSSGGGGSGGGSEVQLVESGGGLVQPGGSLK LSCAASGFTFNKYAINWVRQAPGKGLEWVARIRS KYNNYATYYADQVKDRFTISRDDSKNTAYL QMNN LKTEDTAVYYCVRHANFGNSYISYWAYWGQGTLV TVSSGGGGSGGGGSGGGGSQTVVTQEPSLTVSPG GTVTLTCASST GAVT S GNYP NWVQQKP GQAP RGL IGGTKFLVPGTPARFSGSLLGGKAALTLSGVQPE DEAEYYCTLWYSNRWVFGGGTKLTVLHHHHHH 151 C00404 PSMA PHITriTAC Q VQ VE L S G G GG WQ AGR SLRLSCAYS VT VY VN RM GWFRQAP GKEREFVANINWS GNNRDYAD SVRGRF TISRDNSKNTLYLQMNSLRAEDTAVYYCASEKPG RLGEYDYGSQGTLVTVSSGGGGSGGGSEVQLVES GGGLVQPGNSLRLSCAASGFTFSKFGMSWVRQAP GKGLEWVSSISGSGRDTLYADSVKGRFTISRDNA KTTLYLQMNSLRPEDTAVYYCTIGGSLSVSSQGT LVTVSSGGGGSGGGSEVQLVESGGGLVQPGGSLK
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75/76
SEQIPAT THE: C— Number Construction Sequence LSCAASGFTFNKYAINWVRQAPGKGLEWVARIRS KYNNYAT Y YAD QVKD RF TIS RD D S KNTAYL QMNN LKTEDTAVYYCVRHANFGNSYISYWAYWGQGTLV TVSSGGGGSGGGGSGGGGSQTVVTQEPSLTVSPG GTVTLTCASST GAVT S GNYP NWVQQKP GQAP RGL IGGTKFLVPGTPARFSGSLLGGKAALTLSGVQPE DEAEYYCTLWYSNRWVFGGGTKLTVLHHHHHH 152 C00410 PSMA Z2 TriTAC EVQLVESGGGLVQPGGSLTLSCAASRFMISEYHM HWVRQAPGKGLEWVSTINPAGTTDYAESVKGRFT ISRDNAKNTLYLQMNSLRAEDTAVYYCDSYGYRG QGTLVTVSSGGGGSGGGSEVQLVESGGGLVQPGN SLRLSCAASGFTFSKFGMSWVRQAPGKGLEWVSS IS GS DRG T T Lyad SVKGRF TISRDNAKT LY LQMN SLRPEDTAVYYCTIGGSLSVSSQGTLVTVSSGGG GSGGGSEVQLVESGGGLVQPGGSLKLSCAASGFT FNKYAINWVRQAPGKGLEWVARIRSKYNNYATYY ADQVKDRFTISRDDSKNTAYLQMNNLKTEDTAVY YCVRHANFGNSYISYWAYWGQGTLVTVSSGGGGS GGGGSGGGGSQTWTQEPSLTVSPGGTVTLTCAS STGAVTSGNYPNWVQQKPGQAPRGLIGGTKFLVP GTPARFSGSLLGGKAALTLSGVQPEDEAEYYCTL WYSNRWVFGGGTKLTVLHHHHHH
Table 11: PSMA Binding Domain CDR strings
SEQ IP Nos. Sequence SEQ ID No. 162 RFMISX1YX2MH SEQ ID No. 163 X3INPAX4X5TDYAEX6VKG SEQ ID No. 164 DX7YGY
Table 12: Exemplary Structure Sequences
SEQ ID NO: description Sequence 165 Structure (fl) EVQLVESGGGLVQPGGSLTLSCAAS 166 Structure (f2> WVRQAP GKGLEWVS 167 Structure (f3> RFTISRDNAKNTLYLQMNSLRAEDTAVYYC 168 Structure (f4> DGYGYRGQGTLVTVS S
[00135] Although preferred embodiments of the present invention have been shown and described here, it will be obvious to those skilled in the art that such modalities are provided by way of example only. Numerous variations, changes and substitutions will now occur to those skilled in the art without departing from the invention. It should be understood that several alternatives to the modalities of the invention, here
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76/76 described, can be employed in the practice of the invention. It is intended that the following claims define the scope of the invention and that the methods and structures within the scope of these claims and their equivalents are covered by it.
权利要求:
Claims (74)
[1]
1. Triespecific protein targeting a prostate specific membrane antigen (PSMA) characterized by the fact that said protein comprises:
(a) a first domain (A) that specifically binds to human CD3;
(b) a second domain (B) which is a half-life extension domain; and (c) a third domain (C) that specifically binds to PSMA, where the domains are linked in the order H 2 N- (A) - (C) (B) —COOH, H 2 N- (B) - (A) - (C) -COOH, H 2 N- (C) - (B) - (A) -COOH, or by the ligands Li and L2.
[2]
2. Triespecific protein targeting PSMA according to claim 1, characterized by the fact that the first domain comprises a variable light chain and a variable heavy chain, each of which is capable of specifically binding to human CD3.
[3]
3. Triespecific protein targeting PSMA according to claim 1, characterized by the fact that the first domain comprises one or more sequences selected from the group consisting of SEQ ID NO: 1-88.
[4]
4. Triespecific protein targeting PSMA, according to claim 1, characterized by the fact that the first domain is humanized or human.
[5]
5. Triespecific protein targeting PSMA according to claim 1, characterized by the fact that the first domain has a Kd bond of 150 nM or less for CD3 in cells expressing CD3.
[6]
6. Triespecific protein targeting PSMA, so
Petition 870190117835, of 11/14/2019, p. 8/20
2/12 according to claim 1, characterized by the fact that the second domain binds to human serum albumin.
[7]
7. Tried-specific protein targeting PSMA according to claim 1, characterized by the fact that the second domain comprises a scFv, a variable heavy domain (VH), a variable light domain (VL), a peptide, a linker or a small molecule.
[8]
8. Triespecific protein targeting PSMA according to claim 1, characterized by the fact that the second domain comprises one or more sequences selected from the group consisting of SEQ ID NOs: 89-112.
[9]
9. Triespecific protein targeting PSMA according to claim 1, characterized in that the third domain comprises a scFv, a VH domain, a VL domain, a non-Ig domain, a linker, a knottin or a small molecular unit specifically links to PSMA.
[10]
10. Triespecific protein targeting PSMA according to claim 1, characterized in that the third domain comprises one or more sequences selected from the group consisting of SEQ ID NOs: 113-140.
[11]
11. Tried-specific protein targeting PSMA according to claim 1, characterized in that the LI and L2 ligands are each independently selected from (GS) n (SEQ ID NO: 153), (GGS) n (SEQ ID NO: 154), (GGGS) n (SEQ ID NO: 155), (GGSG) n (SEQ ID NO: 156), (GGSGG) n (SEQ ID NO: 157), or (GGGGS) n (SEQ ID NO : 158), where n is 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10.
[12]
12. Triespecific protein targeting PSMA, according to claim 1, characterized by the fact that the LI and L2 ligands are each independently (GGGGSU
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3/12 (SEQ ID NO: 159) or (GGGGS) 3 (SEQ ID NO: 160).
[13]
13. Triespecific protein targeting PSMA, according to claim 1, characterized by the fact that the domains are linked in the order H2N- (A) - (C) - (B) -COOH.
[14]
14. Trypecific protein targeting PSMA, according to claim 1, characterized by the fact that the domains are linked in the order H2N- (B) - (C) - (A) -COOH.
[15]
15. Triespecific protein targeting PSMA according to claim 1, characterized by the fact that the protein is less than about 80 kDa.
[16]
16. Triespecific protein targeting PSMA according to claim 1, characterized by the fact that the protein is about 50 to about 75 kDa.
[17]
17. Triespecific protein targeting PSMA according to claim 1, characterized by the fact that the protein is less than about 60 kDa.
[18]
18. Triespecific protein targeting PSMA according to claim 1, characterized by the fact that the protein has an elimination time interval of at least about 50 hours.
[19]
19. Triespecific protein targeting PSMA according to claim 1, characterized by the fact that the protein has an elimination time interval of at least about 100 hours.
[20]
20. Triespecific protein targeting PSMA according to claim 1, characterized by the fact that the protein has increased tissue penetration compared to IgG to the same PSMA.
[21]
21. Triespecific protein targeting PSMA according to claim 1, characterized by the fact that
Petition 870190117835, of 11/14/2019, p. 10/20
4/12 the protein comprises a sequence selected from the group consisting of SEQ ID NO: 140-152.
[22]
22. Pharmaceutical composition characterized by the fact that it comprises (i) the triespecific protein targeting PSMA as defined in any one of claims 1 to 21 and (ii) a pharmaceutically acceptable carrier.
[23]
23. Method of treatment of an individual in need of cancer treatment, characterized by the fact that the method comprises the administration of an effective amount of the pharmaceutical composition as defined in claim 22.
[24]
24. Method according to claim 23, characterized by the fact that the cancer is prostate cancer or kidney cancer.
[25]
25. Triespecific protein targeting PSMA, characterized by the fact that said protein comprises:
(a) a first domain (A) that specifically binds to human CD3;
(b) a second domain (B) which is a half-life extension domain; and (c) a third domain (C) that specifically binds to PSMA, wherein the second domain comprises one or more sequences selected from the group consisting of SEQ ID NOs: 113-140.
[26]
26. Triespecific protein targeting PSMA, according to claim 25, characterized by the fact that the domains are linked in the order H2N- (A) - (C) - (B) -COOH,
Petition 870190117835, of 11/14/2019, p. 11/20
5/12
H 2 N- (B) - (A) - (C) -COOH, H 2 N- (C) - (B) - (A) -COOH, or by LI and L2 ligands.
[27]
27. Triespecific protein targeting PSMA according to claim 25 or 26, characterized in that the first domain comprises one or more sequences selected from the group consisting of SEQ ID NOs: 1-88.
[28]
28. Triespecific protein targeting PSMA according to any one of claims 25 to 27, characterized in that the second domain comprises one or more sequences selected from the group consisting of SEQ ID NOs: 89-112.
[29]
29. Triespecific protein targeting PSMA, characterized by the fact that said protein comprises a sequence selected from the group consisting of SEQ ID NOs: 140-152.
[30]
30. Triespecific protein targeting PSMA according to claim 29, characterized in that said protein comprises a sequence selected from the group consisting of SEQ ID NOs: 150-152.
[31]
31. Triespecific protein targeting specific prostate membrane antigen (PSMA) characterized by the fact that the said protein comprises:
(a) a first domain (A) that specifically binds to human CD3;
(b) a second domain (B) which is a half-life extension domain; and (c) a third domain (C) that specifically binds to PSMA, where the domains are linked in the order H 2 N- (C) - (B) (A) -COOH or through LI and L2 ligands, and where the third
Petition 870190117835, of 11/14/2019, p. 12/20
6/12 domain comprises one or more sequences selected from the group consisting of SEQ ID NOs: 113-140.
[32]
32. Triespecific protein targeting PSMA according to claim 31, characterized in that the first domain comprises a variable light chain and a variable heavy chain, each of which is capable of specifically binding to human CD3.
[33]
33. PSMA targeting specific protein according to claim 31, characterized in that the first domain comprises one or more sequences selected from the group consisting of SEQ ID NOs: 1-88.
[34]
34. Triespecific protein targeting PSMA, according to claim 31, characterized by the fact that the first domain is humanized or human.
[35]
35. Triespecific protein targeting PSMA according to claim 31, characterized by the fact that the first domain has a Kd bond of 150 nM or less to CD3 in cells expressing CD3.
[36]
36. Triespecific protein targeting PSMA according to claim 31, characterized by the fact that the second domain binds to human serum albumin.
[37]
37. Triespecific protein targeting PSMA according to claim 31, characterized in that the second domain comprises a scFv, a variable heavy domain (VH), a variable light domain (VL), a peptide, a linker or a small molecule.
[38]
38. PSMA targeting specific protein according to claim 31, characterized in that the second domain comprises one or more sequences selected from the group consisting of SEQ ID NOs: 89-112.
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7/12
[39]
39. Triespecific protein targeting PSMA according to claim 31, characterized in that the third domain comprises a scFv, a VH domain, a VL domain, a non-Ig domain, a ligand, a knottin or a small molecular unit that specifically binds to PSMA.
[40]
40. Triespecific protein targeting PSMA according to claim 31, characterized by the fact that the LI and L2 ligands are each independently selected from (GS) n (SEQ ID NO: 153), (GGS) n ( SEQ ID NO: 154), (GGGS) n (SEQ ID NO: 155), (GGSG) n (SEQ ID NO: 156), (GGSGG) n (SEQ ID NO: 157), or (GGGGS) n (SEQ ID NO: 158), where n, 2, 3, 4, 5, 6, 7, 8, 9, or 10.
[41]
41. Triespecific protein targeting PSMA according to claim 31, characterized by the fact that the LI and L2 ligands are each independently (GGGGS) 4 (SEQ ID NO: 159) or (GGGGS) 3 (SEQ ID NO: 160).
[42]
42. Triespecific protein targeting PSMA according to claim 31, characterized by the fact that the domains are linked in the order H2N- (C) -Ll- (B) -L2 (A) -COOH.
[43]
43. Triespecific protein targeting PSMA according to claim 31, characterized by the fact that the protein is less than about 80 kDa.
[44]
44. Triespecific protein targeting PSMA according to claim 31, characterized by the fact that the protein is about 50 to about 75 kDa.
[45]
45. Triespecific protein targeting PSMA according to claim 31, characterized by the fact that the protein is less than about 60 kDa.
Petition 870190117835, of 11/14/2019, p. 14/20
12/12
[46]
46. Protein triespecifica targeting PSMA according to claim 31, characterized by the fact that the protein has an elimination time interval of at least 50 hours.
[47]
47. Triespecific protein targeting PSMA according to claim 31, characterized by the fact that the protein has an elimination time interval of at least about 100 hours.
[48]
48. Triespecific protein targeting PSMA according to claim 31, characterized by the fact that the protein has greater tissue penetration compared to an IgG for the same PSMA.
[49]
49. Triespecific protein targeting PSMA according to claim 31, characterized by the fact that the protein comprises a sequence selected from the group consisting of SEQ ID NOs: 140-152.
[50]
50. Protein triespecifica targeting PSMA characterized by the fact that the protein comprises a sequence selected from the group consisting of SEQ ID NOs: 150-152.
[51]
51. Pharmaceutical composition characterized by comprising (i) the triespecific protein targeting PSMA as defined in claim 31, and (ii) a pharmaceutically acceptable carrier.
[52]
52. Protein tries to target PSMA,
characterized by fact in what said protein comprises:(a) a first domain (THE) what specifically binds human CD3;(b) a second domain (B) what is a domain of extension
Petition 870190117835, of 11/14/2019, p. 15/20
9/12 half-life; and (c) a third domain (C) that specifically binds to PSMA, where the domains are linked in the order H2N- (C) - (B) (A) -COOH or through Li and L2 ligands and in which the first domain comprises one or more sequences selected from the group consisting of SEQ ID NOs: 1-88.
[53]
53. Triespecific protein targeting PSMA according to claim 52, characterized in that the first domain comprises a light and variable chain and a variable heavy chain, each of which is capable of specifically binding to human CD3.
[54]
54. Triespecific protein targeting PSMA according to claim 52, characterized in that the first domain comprises one or more sequences selected from the group consisting of SEQ ID NOs: 1-88.
[55]
55. Triespecific protein targeting PSMA, according to claim 52, characterized by the fact that the first domain is humanized or human.
[56]
56. Triespecific protein targeting PSMA according to claim 52, characterized by the fact that the first domain has a Kd binding of 150 nM or less to CD3 in cells expressing CD3.
[57]
57. Triespecific protein targeting PSMA according to claim 52, characterized by the fact that the second domain binds to human serum albumin.
[58]
58. Triespecific protein targeting PSMA according to claim 52, characterized by the fact that the second domain comprises a scFv, a variable heavy domain (VH), a variable light domain (VL), a peptide,
Petition 870190117835, of 11/14/2019, p. 16/20
10/12 a ligand or a small molecule.
[59]
59. PSMA targeting specific protein according to claim 52, characterized in that the second domain comprises one or more sequences selected from the group consisting of SEQ ID NOs: 89-112.
[60]
60. Triespecific protein targeting PSMA according to claim 52, characterized in that the third domain comprises a scFv, a VH domain, a VL domain, a non-Ig domain, a ligand, a knottin or a small molecular unit that specifically binds to PSMA.
[61]
61. Triespecific protein targeting PSMA according to claim 52, characterized by the fact that the Li and L2 ligands are each independently selected from (GS) n (SEQ ID NO: 153), (GGS) n ( SEQ ID NO: 154), (GGGS) n (SEQ ID NO: 155), (GGSG) n (SEQ ID NO: 156), (GGSGG) n (SEQ ID NO: 157), or (GGGGS) n (SEQ ID NO: 158), where n, 2, 3, 4, 5, 6, 7, 8, 9, or 10.
[62]
62. PSMA targeting specific protein according to claim 52, characterized by the fact that the Li and L2 ligands are each independently (GGGGS) 4 (SEQ ID NO: 159) or (GGGGS) 3 (SEQ ID NO: 160).
[63]
63. Triespecific protein targeting PSMA according to claim 31, characterized by the fact that the domains are linked in the order H2N- (C) -Li- (B) -L2 (A) -COOH.
[64]
64. Triespecific protein targeting PSMA according to claim 52, characterized by the fact that the protein is less than about 80 kDa.
[65]
65. Triespecific protein targeting PSMA, so
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11/12 according to claim 52, characterized by the fact that the protein is about 50 to about 75 kDa.
[66]
66. Triespecific protein targeting PSMA according to claim 52, characterized by the fact that the protein is less than about 60 kDa.
[67]
67. Triespecific protein targeting PSMA according to claim 52, characterized by the fact that the protein has an elimination time interval of at least 50 hours.
[68]
68. Triespecific protein targeting PSMA according to claim 52, characterized in that the protein has an elimination time interval of at least about 100 hours.
[69]
69. Triespecific protein targeting PSMA according to claim 52, characterized by the fact that the protein has increased tissue penetration compared to IgG to the same PSMA.
[70]
70. Triespecific protein targeting PSMA according to claim 52, characterized in that the protein comprises a sequence selected from the group consisting of SEQ ID NOs: 140-152.
[71]
71. Triespecific protein targeting PSMA according to claim 52, characterized in that the protein comprises a sequence selected from the group consisting of SEQ ID NOs: 150-152.
[72]
72. Pharmaceutical composition characterized by the fact that it comprises (i) the specific tries targeting PSMA as defined in claim 52 and (ii) a pharmaceutically acceptable carrier.
[73]
73. Method of treating prostate cancer,
Petition 870190117835, of 11/14/2019, p. 18/20
12/12 characterized by the fact that the method comprises the administration of an effective amount of a specific protein targeting PSMA, in which said protein comprises:
(a) a first domain (THE) what connect specifically to CD3 human; in (B)sock one second-life; and domain (B) what is an extension domain to (ç)PSMA a thirdr domain (Ç) what connect specifically
where the domains are linked in the order H 2 N- (C) - (B) (A) -COOH or via Li and L2 ligands, and where the third domain comprises one or more sequences selected from the group consisting of SEQ ID NOs: 113-140.
[74]
74. Prostate cancer treatment method, characterized by the fact that the method comprises the administration of an effective amount of a specific specific protein targeting PSMA, where the said protein comprises:
(a) a first domain (THE) what connect specifically to CD3 human; in (B)sock one second-life; and domain (B) what is an extension domain to (ç)PSMA a thirdr domain (Ç) what connect specifically
where the domains are linked in the order H 2 N- (C) - (B) (A) -COOH or via Li and L2 ligands and where the first domain comprises one or more sequences selected from the group consisting of SEQ ID NOs: 1-88.
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法律状态:
2021-10-13| B350| Update of information on the portal [chapter 15.35 patent gazette]|
优先权:
申请号 | 申请日 | 专利标题
US201662426077P| true| 2016-11-23|2016-11-23|
US201662426069P| true| 2016-11-23|2016-11-23|
PCT/US2017/063126|WO2018098356A1|2016-11-23|2017-11-22|Psma targeting trispecific proteins and methods of use|
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