IMMUNOGENIC COMPOSITIONS

专利摘要:
The present invention relates to chimeric capsular polysaccharides and conjugates comprising them. The invention also relates to pharmaceutical compositions comprising chimeric capsular polysaccharides and conjugates thereof. Other aspects include methods of immunizing a patient against infection comprising the step of administering to the patient a conjugate of the invention.
公开号:BE1024282B1
申请号:E2016/5525
申请日:2016-06-30
公开日:2018-01-15
发明作者:Edmondo Campisi；Y Ros Immaculada Margarit；Roberto Rosini
申请人:Glaxosmithkline Biologicals Sa；
IPC主号:

专利说明:

IMMUNOGENIC COMPOSITIONS TECHNICAL AREA
The present invention relates to chimeric capsular saccharides of Streptococcus agalactiae including conjugates comprising said chimeric capsular polysaccharides and carrier proteins.
BACKGROUND OF THE INVENTION
Streptococcus agalactiae (also known as "Group B Streptococcus" or "GBS") is an encapsulated, β-hemolytic Gram-positive microorganism that colonizes the anogenital tract of 25 to 30% of healthy women. It is a major cause of neonatal sepsis and meningitis, especially in children born to mothers carrying the bacteria. The pathogen can also infect adults with an underlying disease, especially the elderly, and cause bovine mastitis. Streptococcus pneumoniae (also known as "S. pneumo" or "pneumococcus") is a Gram-positive, alpha-hemolytic encapsulated microorganism that resides in the nasopharynx of healthy carriers without causing symptoms. In susceptible individuals, for example the elderly, children and immunocompromised individuals, the bacteria can become pathogenic and cause a disease such as pneumonia, meningitis or septicemia.
The GBS capsule is a major virulence factor allowing the bacteria to escape the innate immune defenses of humans. It consists of high molecular weight polymers made up of multiple identical repeat units (UR) of four to seven monosaccharides. GBS can be classified into ten serotypes (Ia, Ib, II, III, IV, V, VI, VII, VIII, and IX) whose chemical composition and profile of glycosidic bonds of their repeating units of capsular polysaccharides differ. Similarly, the capsule of S. pneumoniae is a major virulence factor made up of high molecular weight polymers made up of multiple identical repeat units. However, unlike GBS, more than 90 different serotypes of S. pneumoniae have been identified so far.
GBS and S. pneumoniae capsular saccharides are being studied for use in vaccines. However, saccharides are T-independent antigens and are generally weakly immunogenic. Therefore, conjugation to a carrier can convert T-independent antigens to T-dependent antigens, thereby improving memory responses and allowing the development of protective immunity. The most effective saccharide vaccines are therefore based on glycoconjugates. Most of the work on GBS capsular polysaccharide vaccines has been done by Dennis Kasper and colleagues, and is described in documents such as references 1 to 9. Conjugate vaccines for each of the GBS serotypes Ia, Ib, II , III, and V have been shown to be safe and immunogenic in humans [10]. Several vaccines intended to be used in the protection against an infection with S. pneumoniae are known and generally consist of purified polysaccharides selected among twenty-three different serotypes (1, 2, 3, 4, 5, 6b, 7F, 8,9N , 9V, 10A, 11A, 12F, 14, 15B, 17F, 18C, 19F, 19A, 20, 22F, 23F, and 33F) and include, for example, Prevnar 7®, Synflorix® and Prevnar 13®.
However, while capsular polysaccharides can induce a protective humoral response, the protection is highly specific for the specific serogroup (in other words, Ia, Ib, III, etc.) and does not confer cross-protection against other serogroups. Therefore, there remains a need for other improved GBS conjugate vaccines.
BRIEF DESCRIPTION OF THE INVENTION
In a first aspect, the invention relates to chimeric capsular polysaccharides comprising at least one repeat unit of capsular polysaccharide of a first serotype and at least one repeat unit of capsular polysaccharide of a second different serotype, in which the repeat units are linked by a glycosidic bond. Chimeric capsular polysaccharides are bacterial capsular polysaccharides. In particular, the chimeric capsular polysaccharide is a polymer of high molecular mass, however more particularly having a molecular mass (MW)> 30 kDa, for example, a MW which can reach approximately 50 kDa or more, or approximately 100 kDa or more, approximately 140 kDa or more, about 200 kDa or more, about 230 kDa or more, about 260 kDa or more, or any range between them, for example, having an MW in the range of 50 to 200 kDa, from 80 to 150 kDa, from 150 to 300 kDa, from 175 to 275 kDa or from 175 to 250 kDa.
In certain embodiments, the invention relates to chimeric capsular polysaccharides comprising at least one repeat unit of capsular polysaccharide of a first GBS serotype and at least one repeat unit of capsular polysaccharide of a second different GBS serotype, in which the repeat units are linked by a glycosidic bond. In particular in which the repeat units are present in a balanced epitope ratio, more particularly in which the repeat units are present in a ratio of 1/1.
In particular embodiments, the invention relates to a chimeric capsular polysaccharide comprising at least one repeat unit of a first serotype of GBS capsular polysaccharide, at least one repeat unit of a second serotype of GBS capsular polysaccharide and at least a repeat unit of a third serotype of GBS capsular polysaccharide, in which the first, second and third repeat units are from different serotypes of GBS capsular polysaccharides and in which the repeat units are joined by glycosidic linkages.
Wild type GBS capsular polysaccharides are homopolymers formed from identical repeat units joined by glycosidic linkages. In contrast, the chimeric capsular polysaccharides of the present invention are heteropolymers formed from repeat units of at least two different serotypes of GBS. More specifically, and since the chimeric polysaccharides are generated in vivo by individual bacterial cells, the capsular polysaccharides of the invention are heteropolymers formed from repeat units having the structure of repeat units of at least two serotypes different from GBS.
Specific chimeric polysaccharides include repeat units having the structure of repeat units of GBS capsular serotypes Ia + III, Ia + Ib + III, Ib + III, VII + IX, V + VII + IX, IV + V, V + VII and IV + V + VII.
In certain embodiments, the invention relates to chimeric capsular polysaccharides comprising repeating units joined by at least two, at least three, at least four or at least five different types of glycosidic linkages. In particular, the glycosidic bonds are selected from the group consisting of β-d-Glcp- (1 ^ 4) ^ - d-Galp, β-ά-01ορ- (1 ^ 6) -β-ά-01ορΝΆο, β- d-Glcp- (1 ^ 6) ^ - d-Glcp, β-d-Glcp - ^^) β-d-Galp and β-d-Glcp- (1 ^ 4) -α-d-Glcp.
In certain embodiments, the invention relates to chimeric capsular polysaccharides comprising at least one repeated unit of capsular polysaccharide of a first serotype of Streptococcus pneumoniae and at least one repeated unit of capsular polysaccharide of a second serotype different from Streptococcus pneumoniae, in which the repeat units are linked by a glycosidic bond.
In a second aspect, the invention relates to a conjugate comprising (i) a chimeric capsular polysaccharide of the first aspect and (ii) a carrier protein. Preferably, the carrier protein is covalently linked to the capsular polysaccharide. In some embodiments, the carrier protein is covalently linked to the capsular polysaccharide via a linker, for example, adipic acid dihydrazide. Preferably, the conjugate is an immunogenic conjugate capable of inducing an immune response against at least two different serotypes of GBS, at least three different serotypes or more. Preferably, the immune response is a protective immune response, for example, a cross-protected immune response.
In certain embodiments, the carrier protein is selected from the group consisting of tetanus toxoid, diphtheria toxoid, CRM197, GBS80, GBS59 and GBS59 (6xD3) -1523.
In a third aspect, the invention relates to pharmaceutical compositions comprising the chimeric polysaccharide according to the first aspect and / or the conjugate according to the second aspect. Particularly, the chimeric polysaccharide and / or the conjugate are present in an amount effective for preventing systemic infections in an animal, in which said systemic infections are caused by group B streptococcus. In particular, the pharmaceutical compositions of the invention comprise a diluent, a pharmaceutically acceptable carrier or excipient. More particularly, the pharmaceutical compositions of the invention are vaccine compositions capable of eliciting an immune response against group B streptococcus.
In a fourth aspect, the invention relates to a method of immunizing a patient against infection with group B streptococcus comprising the step of administering to the patient a conjugate of the invention.
BRIEF DESCRIPTION OF THE DRAWINGS
Figure 1: provides a generalized structure of the cps operon, the CPS assembly genes are found in a long polycistronic operon which is widely conserved in a large number of other encapsulated bacteria such as Streptococcus pneumoniae.
Figure 2: proposes a comparison of the generalized structures of the cps operon of a serotype of
Streptococcus agalactiae type III and a serotype of Streptococcus pneumoniae type 14.
Figure 3: shows the structure of repeated units of GBS capsular polysaccharides Ia, Ib, III.
Figure 4: shows the structure of repeated units of GBS IV, V and VI capsular polysaccharides.
Figure 5: shows the structure of repeated units of GBS VII and VIII capsular polysaccharides.
Figure 6: shows the structure of repeated units of capsular polysaccharides of GBS IX and II.
Figure 7: provides an example of a type Ia / III chimeric polysaccharide comprising type Ia repeat units and type III repeat units joined by β-d-Glcp- (1 ^ 4) -β-d glycosidic bonds -Galp and β-d-Glcp- (1 ^ 6) -β-d-GlcpNAc.
Figure 8: provides an example of a type Ia / Ib / III chimeric polysaccharide which comprises repeat units of type Ia, type III and type Ib joined by glycosidic bonds β-d-Glcp- (1 ^ 4) -β-d-Galp and β-d-Glcp- (1 ^ 6) -β-d-GlcpNAc.
Figure 9: provides an example of a chimeric repeat unit obtained from bacteria of serotypes IX expressing cps5O. The additional side chain is shown in bold.
Figure 10: proposes a diagram of the CPS operon of different serotypes of Streptococcus agalactiae with the respective cps genes presented in the form of arrows.
Figure 11a: pAM-V and pAM-IX structures used to transform GBV strains of serotype V and IX wild type, respectively. cps5M, cps5O and cps5I were cloned into pAM401-p80 / t80 to obtain pAM-V. The cloning of cps9M and cps9I in pAM401-p80 / t80 was carried out to obtain pAM-IX.
Figure 11b: schematic structure of pAM-IX-V.
Figure 12: PS V-IX gives a positive signal indicating that the type V strain (pAM-IX) produces chains of chimeric capsular polysaccharides which contain repeat units specifically recognized by type V specific mAbs and type specific mAbs IX. The expression in heterologous trans of cps9M and of cps9I allows the assembly by SGB 2603 (V) of capsular polysaccharides reacting with the specific antisera of type V and type IX CPS.
Figure 13: the expression in heterologous trans of cps5M, cps5O and cps5I allows the assembly by SGB IT-NI-016 (IX) of capsular polysaccharides reacting with specific antisera of CPS type IX and type V.
Figure 14: comparison of 1 H NMR spectra of PS V-IX and PS V-IXb. The spectra are highly similar to those of PS V and PS IX and contain elements which are characteristic of the two capsular polysaccharides. The spectrum of PS V IXb is more similar to that of PS V than to that of PS V-IX.
Figure 15: the average composition of the repeat units of PS V-IX and PS V-IXb was estimated by NMR DEPT. About 75% of the repeat units of the chimeric V-IX type polysaccharide are of type IX while the remaining 25% are of type V. About 50% of the repeat units of the chimeric type V-IXb polysaccharide are of type IX whereas the The remaining 50% are type V.
Figure 16: Vectors for the production of PS-Ia-Ib-III or PS-Ia-III in a context of serotype Ia.
Figure 17: PS V-IXb gives a positive signal indicating that the type V strain (pAM-IX-V) produces 15 chains of chimeric capsular polysaccharides which contain repeat units specifically recognized by type V specific mAbs and specific mAbs of type IX. The expression in combined heterologous trans cps9M, cps9I, cps5M, cps5O and cps5I allows the assembly by SGB 2603 (V) of capsular polysaccharides reacting with the specific antisera of CPS type V and type IX.
Figure 18: Dot-blot sandwich analysis of PS V-IX and PS V-IXb
Figure 19: The competitive ELISA confirmed that PSV-IXb binds to type-specific mAbs with half the effectiveness of native polysaccharides at the same concentration. PSV-IXb appears to be homogeneously composed of PS V and PS IX repeat units.
DETAILED DESCRIPTION OF THE INVENTION The invention is based on the capsular saccharides of Streptococcus agalactiae.
GBS capsular saccharide is covalently linked to the peptidoglycan backbone, and is distinct from group B antigen, which is another saccharide that is linked to the peptidoglycan backbone. All the genes responsible for the synthesis and attachment to the cell wall of GBS capsular polysaccharides (CPS) are grouped in the cps operon. This operon consists of 16 to 18 genes, whose sequences differ according to the serotypes (Figure 1). The assembly pathway of the capsular polysaccharide of certain serotypes of Streptococcus pneumoniae is very similar to that of GBS, since they are both polymerase-dependent. Specifically, within the serotypes which have a polymerase-dependent CPS synthesis machinery, the cps operons have the same organization (FIG. 2). In some S. pneumoniae serotypes, even the chemical structure of CPS is similar to that of some GBS serotypes. For example, the chemical structure of the CPS of S. pneumoniae serotype 14 and of GBS serotype III is very similar and the rate of identity of amino acid sequences between the homologous proteins encoded by their cps operons is 39.5%. Thus, while the invention is described below with a particular emphasis on GBS, the discoveries of the inventors also apply to the preparation of chimeric polysaccharides of S. pneumoniae.
The precise chemical structures of GBS capsular polysaccharides serotypes Ia, Ib, II, III, IV, V, VI, VII, VIII and IX are well described (13-20). They are made up of repeating units of four to seven monosaccharides with a skeleton and one or two side chains. Four monosaccharides (more precisely Glcp, Glap, GlcpNAc and NeupNAc) are present in all of the ten serotypes described, and the NeupNAc residue is always encountered at the terminal end of one of their side chains. However, the glycosidic link profile is unique to each serotype. Thus, a subunit or repeated unit (UR) is the part of the capsular polysaccharide whose repetition by bonding the repeated units together successively produces the complete polysaccharide. In particular, the repeat unit is an oligosaccharide repeat unit. The UR structures of the GBS capsular polysaccharides Ia, Ib, III are shown in Figure 3. The UR structures of the GBS capsular polysaccharides IV, V and VI are shown in Figure 4. The UR structures of the capsular polysaccharides of GBS VII and VIII are shown in Figure 5. The UR structures of the capsular polysaccharides of GBS IX and II are shown in Figure 6.
The inventors have discovered that recombinant GBS strains expressing foreign or exogenous cps genes can produce chimeric capsular polysaccharides. These chimeric capsular polysaccharides comprise two or more different repeat units having the structure of repeat units of two or more different serotypes. Chimeric capsular polysaccharides can be used to simplify the manufacture of multivalent conjugate vaccines.
The chimeric capsular polysaccharides of the invention can also comprise new epitopes not present in native, wild type capsular polysaccharides, serotypes of GBS Ia, Ib, II, III, IV, V, VI, VII, VIII, IX, and serotypes of Streptococcus pneumoniae 1, 2, 3, 4, 5, 6b, 7F, 8.9N, 9V, 10A, 11A, 12F, 14, 15B, 17F, 18C, 19F, 19A, 20, 22F, 23F, and 33F. Since the capsular polysaccharide is one of the main targets for vaccination, a major vaccine concern, both for GBS and for S. pneumoniae, is the possibility of capsular switching between serotypes. Vaccination based on capsular polysaccharides can exert selective pressure responsible for switching capsules of virulent genotypes, and their escape to vaccine coverage. As a result, the use of these chimeric capsular polysaccharides comprising new epitopes can be advantageous for preventing or reducing capsular switching by prioritizing the emergence of new capsular serotypes.
bacteria
The chimeric capsular polysaccharides of the invention are prepared from Streptococcus agalactiae expressing at least one exogenous cps gene due to a genetic modification. Thus, the present invention relates to a Streptococcus agalactiae bacterium genetically modified for the production of a chimeric capsular polysaccharide, in which the bacterium comprises a battery of genes of endogenous capsular polysaccharides and at least one exogenous or foreign cps gene.
The DNA region of the cps operon is made up of 16 to 18 genes in different serotypes of GBS [149]. It is predicted that the 5 'cpsABCD genes are involved in the regulation of capsule synthesis; the central region of cpsE and cpsL codes for the enzymes responsible for the synthesis, transport, and polymerization of polysaccharide repeat units; finally, the neuBCDA genes are responsible for the synthesis of active sialic acid, a sugar component present in all capsular polysaccharides of GBS [150]. Figure 10 provides a diagram of the cps operon with the respective cps genes. The cps genes derived from serotype V are identified using the nomenclature cps5G, cps5H, cps5M, cps5O and so on. The cps genes derived from serotype IX are identified using the nomenclature cps9G, cps9H, cps9M and so on. The cps genes derived from other serotypes are identified using similar nomenclature and the identifiers, 1a, 1b, 2, 3, 4, 6, 7 and 8. A similar cps operon exists in Streptococcus pneumoniae.
The term "endogenous" refers to a native gene at its natural location in the genome of an organism. A "foreign" or "exogenous" gene refers to DNA sequences or genes that are not normally present in the cell being transformed, or possibly simply are not present in the form, structure, etc., as than encountered in the gene or segment of DNA transforming, for example, a cps gene which is not normally encountered in the serotype of the host cell but which is introduced by gene transfer. Thus, the use of the term “exogenous cps gene” in this sense means that the genetically modified bacterium is of a first serotype, for example, selected from the serotypes Ia, Ib, II, III, IV, V, VI, VII , VIII, IX of GBS and the exogenous cps gene (s) are of a second different serotype. In certain embodiments, genetically modified Streptococcus agalactiae or Streptococcus pneumoniae express at least two exogenous cps genes of the second and / or third different serotypes. The exogenous cps gene (s) can be selected from the group consisting of cpsE, cpsF, cpsG, cpsH, cpsM, cpsO, cpsI, cpsJ, cpsP, cpsQ, cpsK and cpsL. Specific exogenous cps genes include cpsM, cpsO and cpsI. The exogenous cps gene (s) are encoded by an exogenous (eg, recombinant) nucleic acid, which has been introduced into the genetically modified Streptococcus agalactiae or Streptococcus pneumoniae cell. The nucleic acid can be introduced into an expression vector for expression in a Streptococcus agalactiae or Streptococcus pneumoniae cell. The expression vector will generally include signals capable of expressing the endogenous cps gene encoded by the introduced nucleic acid. For example, an expression vector can comprise a complete set of control sequences including initiation, promoter and termination sequences which function in a bacterial cell. Appropriate expression vectors may include 5 'and 3' regulatory sequences operably linked to the sequences of interest. The nature of all of the regulatory sequences provided in the expression construct will depend on the desired expression profile. The types of regulatory sequences will be known to those skilled in the art. A vector may also contain one or more restriction sites or homologous recombination sites, to allow insertion of the gene into the genome of the host cell, at a preselected position. In the case of the nucleotide sequence, this can be linked in a functional manner to the gene sequence whose expression must be modified. Transcription and translation initiation regions can also be provided on the expression vector, to allow expression of incoming genes, transcription and translation termination regions, and regulatory sequences.
In some embodiments, the vector is delivered and integrated into the bacterial chromosome by homologous and / or site-specific recombination. The integrative vectors used to deliver these genes and / or operons can be suicide or conditional replication plasmids, bacteriophages, transposons or linear DNA fragments obtained by restriction hydrolysis or by PCR amplification. Integration is preferably targeted at chromosomal regions which can be dispensed with for growth in vitro. Alternatively, the expression vector may be non-integrative, for example, an episomal vector such as circular / linear replicating plasmids, cosmids, phasmids, lysogenic bacteriophages or artificial bacterial chromosomes. The selection of the recombination event can be carried out by means of a selectable genetic marker, for example genes conferring resistance to antibiotics (for example, kanamycin, erythromycin, chloramphenicol, or gentamycin), genes conferring resistance to heavy metals and / or toxic compounds or genes complementing auxotrophic mutations. Suitable vectors and transformation systems are known in the art and examples are provided below.
The cps genes of interest can be encoded in a single expression vector, or in different expression vectors. In the latter case, the different expression vectors can be cotransfected either simultaneously or successively in the cell of Streptococcus agalactiae or Streptococcus pneumoniae. "Co-transfection" means the process of transfection of a Streptococcus agalactiae or Streptococcus pneumoniae cell with more than one expression vector. When the cell has been cotransfected with an expression vector capable of expressing one or more first cps genes and a vector capable of expressing one or more second cps genes, the vectors may contain independently selectable markers. When nucleotide sequences coding for two or more cps genes of interest are contained in a single expression vector, in certain embodiments, the nucleotide sequences will be functionally linked to a common control element (for example, a promoter), for example, the common control element controls the expression of all the nucleotide sequences coding for cps genes on the single expression vector. In some embodiments, the nucleotide sequences encoding different cps genes are operably linked to different control elements (eg, a promoter (s)). In certain embodiments, one of the nucleotide sequences may be operably linked to an inducible promoter, and one or more of the other nucleotide sequences may be functionally linked to a constitutive promoter.
Competition between alternating repeat units as substrates for enzymes catalyzing the steps downstream of cps production can promote the synthesis of the homologous or heterologous repeat unit. Thus, the efficient production of chimeric capsular polysaccharides may require the properly balanced expression of endogenous and exogenous cps genes. In order to balance the expression, those skilled in the art will be aware of a number of options. These may include, as a non-limiting example, (i) replacement of the promoter; (ii) adding genes; and / or (iii) replacement of genes.
In the replacement of the promoter, the promoter which controls the expression of one or more endogenous cps genes can be replaced by a promoter to provide lower or higher expression levels. A particular promoter for its use in the invention is the promoter of SGB P80 (Buccato S., et al. (2006) J. Infect. Dis. 194, 331.340). Other promoters are known in the art and include, but are not limited to, a promoter of the RNA polymerase of bacteriophage T7; a trp promoter; a promoter of the lac operon; a hybrid promoter; for example, a lac / tac hybrid promoter, a lac / trc hybrid promoter, a trp / lac promoter, a T7 / lac promoter; a trc promoter; a tac promoter; and the like. In some embodiments the cps genes of interest are operably linked to an inducible promoter or to a constitutive promoter. Inducible and constitutive promoters are well known to those skilled in the art.
When adding genes, a bacteria that already expresses the endogenous cps gene receives a second copy of the relevant gene. This second copy can be integrated into the bacterial chromosome or can be on an episomal element such as a plasmid. The effect of adding a gene is to additively increase expression by increasing the number of copies of genes. When a plasmid is used, it is ideally a plasmid with a large number of copies, for example, more than 10 or even more than 100. In the replacement of genes, the addition of genes occurs but is accompanied deletion of the existing copy of the gene. For example, at least one endogenous cps gene can be deleted and replaced by a copy encoded by a plasmid. Expression by the replacement copy, depending on the promoter used, may be higher or lower than expression by the previous copy. Thus, in certain embodiments, the genetically modified Streptococcus agalactiae or Streptococcus pneumoniae bacterium comprises a deletion or an inactivation of one or more genes from the endogenous capsular polysaccharide gene battery. The deleted gene (s) may include at least one of the cpsE, cpsF, cpsG, cpsM, cpsI and cpsJ, cpsM, cpsO and cpsI genes. The replacement copy may be an exogenous cps gene and / or a copy of the native endogenous cps gene.
In some embodiments, more than one gene addition or gene replacement event may occur such that expression by multiple copies of the cps gene of interest or combinations of over- or under-expression different cps genes of interest can take place.
In certain embodiments, a bacterium expresses an exogenous cpsO gene, in particular a cps5O gene, in particular the bacterium is Streptococcus agalactiae serotype IX. Figure 9 provides an example of a chimeric repeat unit of serotype IX obtained from bacteria expressing cps5O with the additional side chain presented in bold.
In certain embodiments, a bacterium expresses exogenous cpsM and cpsI genes, particularly the cps9M and cps9I genes, in particular the bacterium is Streptococcus agalactiae serotype V.
In certain embodiments, a bacterium expresses exogenous cpsM, cpsO and cpsI genes, in particular the cps5M, cps5O and cps5I genes, in particular the bacterium is Streptococcus agalactiae serotype IX.
In some embodiments, a bacterium produces a chimeric capsular polysaccharide that includes at least one repeat unit of a GBS serotype Ia capsular polysaccharide, at least one repeat unit of a GBS serotype Ib capsular polysaccharide, and at least one repeat unit of a GBS serotype III capsular polysaccharide, in which the repeat units are joined by glycosidic bonds. In particular, the ratio of the repeated units of Ia, Ib and III is approximately 1/1/1.
In some embodiments, a bacterium produces a chimeric capsular polysaccharide that includes at least one repeat unit of GBS serotype V capsular polysaccharide and at least one repeat unit of GBS serotype IX capsular polysaccharide, in which the repeat units are joined by glycosidic linkages. In particular, the ratio of repeat units of V to IX is about 1/1.
In some embodiments, a bacterium produces a chimeric capsular polysaccharide that includes at least one repeat unit of a GBS serotype V capsular polysaccharide, at least one repeat unit of a GBS serotype IX capsular polysaccharide and at least one repeat unit of a GBS serotype VII capsular polysaccharide, in which the repeat units are joined by glycosidic bonds. In particular, the ratio of repeat units of V, IX and VII is about 1/1/1.
In particular, the reference to "at least one repeat unit" may refer to at least 2, 10, 20, 50, 60, 70, 80, 90, 100 repeat units, at least 150, 200, 250, 500, 1000 or more repeat units. In particular, the ratio of repeated units is approximately 1/1 or 1/1/1.
Methods for preparing the nucleic acid constructs and vectors described herein are known to those of skill in the art, and specific methods are illustrated in the examples. Methods for cloning and bacterial transformation, DNA vectors and the use of regulatory sequences are well known to those skilled in the art and can, for example, be found in Current Protocols in Molecular Biology, FM Ausubel et al., Wiley Interscience, 2004, incorporated into this document for reference.
Chimeric capsular polysaccharide
The chimeric capsular polysaccharides of the invention comprise two or more different repeat units having the structure of repeat units of two or more different serotypes of GBS or Streptococcus pneumoniae. The chimeric capsular polysaccharides of the invention also comprise at least one glycosidic bridge or link between a molecule in a first repeat unit and a molecule in a second repeat unit. As a non-restrictive example, the molecules are generally carbohydrate molecules, for example sugar molecules. The molecule in the first repeat unit can be β-d-Glcp. The molecule in the second repeated unit can be β-d-Glap, β-d-GlcpNAc, β-d-Glcp or α-d-Glcp. The sugar molecules can be joined by a bond between the number 1 carbon atom (C1) in a sugar of the first repeat unit and the fourth carbon atom (C4) of the second repeat unit in the chimeric capsular polysaccharide, ( designated 1 ^ 4), by a bond between the carbon atom number 1 (C1) in a sugar of the first repeated unit and the second carbon atom (C2) of a sugar of the second repeated unit in the capsular polysaccharide chimera (designated 1 ^ 2), or by a bond between the carbon atom number 1 (C1) in a sugar of the first repeated unit and the sixth carbon atom (C6) of a sugar of the second repeated unit in the chimeric capsular polysaccharide (designated 1 ^ 6). The use of 1 ^ 4, 1 ^ 2 and 1 ^ 6 refers to the covalent bond between carbon atoms at differently numbered positions in sugar. Particular examples of different glycosidic linkages occurring between repeat units in capsular polysaccharides include, β-d-Glcp- (1 ^ 4) -β-d-Galp, β-d-Glcp- (1 ^ 6) ^ - d-GlcpNAc, β-d-Glcp- (1 ^ 6) -β-d-Glcp, β-d-
Glcp- (1 ^ 2) ^ - d-Galp and β-ά-01ορ- (1 ^ · 4) -α-ά-01ορ. In certain embodiments, the invention relates to chimeric capsular polysaccharides comprising oligosaccharide repeat units joined by at least two different types of glycosidic bonds. In particular, the chimeric capsular polysaccharides may comprise oligosaccharide repeat units joined by at least two different types of glycosidic bonds selected from the group consisting of β-d-G1cp- (1 ^ 4) -β-d-Ga1p, β-d -Glcp- (1 ^ 6) ^ - d-GlcpNAc, β-d-G1cp- (1 ^ 6) -β-d-G1cp, β-d-Glcp- (1 ^ 2) -β-d-Galp and β-d-Glcp- (1 → 4) -α-d-Glcp.
The repeat units of type Ia and III of GBS are practically identical, containing the disaccharide and the variable trisaccharide linked by a 1 ^ 3 bond. The only difference between wild type capsular polysaccharides of GBS serotypes Ia and III is the glycosidic linkage that links one repeat unit to the next. In type Ia, the repeat units have a 1 ^ 4 bond via the β-d-Galp of the disaccharide. In type III, the repeat units have a 1 ^ 6 bond via the β-d-GlcpNAc of the variable trisaccharide. Thus, a chimeric capsular polysaccharide of GBS serotypes Ia and III comprises repeat units with a 1 ^ 4 bond through the β-d-Galp of the disaccharide and repeat units with a 1 ^ 6 bond via the β-d-GlcpNAc of the variable trisaccharide . More particularly, a chimeric capsular polysaccharide of serotypes Ia and III of GBS comprises the oligosaccharide URs joined by the glycosidic bonds β-d-Glcp (1 ^ 4) ^ - d-Galp and β-d-G1cp- (1 ^ 6) -β-d-G1cpNAc. For example, a type Ia / III chimeric polysaccharide may include type Ia URs and type II URs joined by the glycosidic bonds β-d-Glcp (1 ^ 4) -β-d-Galp and β -d-Glcp- (1 ^ 6) ^ - d-GlcpNAc in the arrangement shown in Figure 7. A person skilled in the art will recognize that other UR arrangements and other links are possible.
In certain embodiments, the invention relates to chimeric capsular polysaccharides comprising oligosaccharide URs joined by at least two, at least three, at least four or at least five different types of glycosidic bonds. In particular, the glycosidic bonds are selected from the group consisting of β-d-Glcp- (1 ^ 4) ^ - d-Galp, β-d-Glcp- (1 ^ 6) -β-d-GlcpNAc, β- d-Glcp- (1 ^ 6) ^ - d-Glcp, β-d-Glcp - ^^) β-d-Galp and β-d-Glcp- (1 ^ 4) -ad-Glcp. FIG. 8 provides an example of a chimeric polysaccharide of type Ia / Ib / III which comprises repeat units of type Ia, of type III and of type Ib joined by glycosidic bonds β-d-Glcp- (1 ^ 4) ^ -d-Galp and β-d-Glcp ^ 1 ^ 6) ^ - d-GlcpNAc. A person skilled in the art will recognize that other arrangements of these URs and other connections are possible.
The ratio of oligosaccharide URs of the first serotype of capsular polysaccharide to oligosaccharide URs of the second serotype different from capsular polysaccharides may vary. Suitable ratios, for example determined by number or mass, can include 1/1, 1/2, 1/3 1/4, 2/1, 3/1 or 4/1. Generally preferred ratios will be balanced and on the order of 1/1 but the precise ratio
can be difficult to control exactly. As a variant, the content of oligosaccharide URs of the first serotype of capsular polysaccharide and of oligosaccharide URs of the second different serotype of capsular polysaccharide can be presented in terms of percentage (%), for example determined by number or mass. When the chimeric capsular polysaccharides comprise two different types of UR, preferably approximately 50% of the UR will be of one type and approximately 50% of the bonds will be of the other type. A person skilled in the art will understand that these percentages will not always be precise and that there may be some variations in these figures. For example, there may be about X% of UR of the first type and about Y% of the second type, where Y = 100 - X, for example, when X = 30%, Y = 70%; when X = 35%, Y = 65%; when X = 40%, Y = 60%, etc.
Variances of plus or minus 10%, 11%, 12%, 13%, 14%, 15% can be expected. When chimeric polysaccharides include at least three different types of UR, suitable ratios may include 1/1/1, 1/1/2, 1/1/3, 1/1/4, 1/2/1, 1 / 3/1, 1/2/2, 1/2/3, 1/2/4, 1/4/1, 1/4/2, 1/4/3, 1/4/4, 2/1 / 1, 2/1/2, 2/1/3, 2/1/4, 2/2/1, 2/3/1, 2/4/1, 4/1/1, 4/1/2 , 4/1/3, 4/1/4, 4/2/1, 4/3/1 and 4/4/1. Similarly, appropriate percentages can follow the profile, X% + Y% + Z% = 100%, etc.
When the chimeric capsular polysaccharides comprise two different types of glycosidic bonds, preferably approximately 50% of the glycosidic bonds will be of one type and approximately 50% of the bonds will be of the other type. A person skilled in the art will understand that these percentages will not always be precise and that there may be some variations in these figures. For example, there may be about X% of the glycosidic bonds of one type and about Y% of the second type, where U = 100 - X. For example, when X = 30%, Y = 70%; when X = 35%, Y = 65%; when X = 40%, Y = 60%, etc.
The chimeric capsular polysaccharides of the invention may be in their native form, or may be modified. For example, the polysaccharides can be depolymerized to give shorter fragments for use with the invention, by hydrolysis in moderate acid, by heating, by size exclusion chromatography, etc. Chain length would affect the immunogenicity of GBS saccharides in rabbits [4].
In particular, the chimeric capsular polysaccharide is a high molecular weight polymer. For GBS, it is preferable to use chimeric capsular polysaccharides having a MW> 30 kDa, for example, a MW of up to ~ 50 kDa, about 100 kDa, about 140 kDa, about 200 kDa, about 230 kDa or about 260 kDa or any range between these MW, for example, having MW in the range of 50 to 200 kDa, 80 to 150 kDa, 150 to 300 kDa, 175 to 275 kDa or 175 to 250 kDa. Molecular masses can be measured by gel filtration against dextran standards, for example those available from Polymer Standard Service [11].
The chimeric capsular polysaccharides can be chemically modified, for example, the saccharide can be de-O-acetylated (partially or totally), de-N-acetylated (partially or totally), N-propionate (partially or totally), etc. Deacetylation can occur before, during or after conjugation, but preferably occurs before conjugation. Depending on the particular saccharide, deacetylation may or may not affect immunogenicity. The relevance of O-acetylation on GBS saccharides in different serotypes is discussed in reference 12, and in certain embodiments the O-acetylation of sialic acid residues at positions 7, 8 and / or 9 is kept before, during or after conjugation, for example, by protection / deprotection, by re-acetylation, etc. However, typically, the chimeric capsular polysaccharide used in the present invention has substantially no O-acetylation of the sialic acid residues at positions 7, 8 and / or 9. In particular, when the chimeric capsular polysaccharide has been purified by extraction of bases as described below, then O-acetylation is typically lost (reference 12). The effect of deacetylation etc. can be assessed by routine dosages.
The chimeric capsular polysaccharides can be purified by known techniques, as described in references 2 and 13, for example. A typical process involves base extraction, centrifugation, filtration, RNase / DNase treatment, protease treatment, concentration, exclusion exclusion chromatography, ultrafiltration, anion exchange chromatography, and also ultrafiltration. Treatment of GBS cells with the enzyme mutanolysin, which cleaves the bacterial cell wall to release the components of the cell wall, is also helpful.
Alternatively, the purification process described in reference 14 can be used. It involves base extraction, ethanol / CaCl2 treatment, CTAB precipitation, and re-solubilization. Another process variant is described in reference 15.
The capsular polysaccharides of Streptococcus pneumoniae can be prepared by standard techniques known to those skilled in the art, for example, as described in documents EP497524 and EP497525.
The chimeric capsular polysaccharides of the invention can also be described or specified in terms of their cross-reactivity. The term "cross-reactive" as used in this document refers to the ability of the immune response induced by the chimeric capsular polysaccharides of the invention to stimulate the production of antibodies capable of reacting with at least two different serotypes of GBS or Streptococcus pneumoniae. The term "cross-protected" as used in this document refers to the ability of the immune response, induced by the chimeric capsular polysaccharides of the invention, to prevent or alleviate infection or disease by at least two different serotypes of GBS or Streptococcus pneumoniae. In particular embodiments of the present description, the chimeric capsular polysaccharides of the present description do not exhibit cross-reaction and / or cross-protection against a plurality of GBS or Streptococcus pneumoniae serotypes, for example, 2, 3, 4, 5, 6, 7, 8, 9 or 10 serotypes. Cross-reactivity is believed to be an indicator of cross-protection. Those skilled in the art will readily appreciate that the present invention facilitates the manufacture of vaccines by allowing the production of a chimeric capsular polysaccharide which is capable of providing protection against multiple infectious serotypes of GBS or Streptococcus pneumoniae.
Conjugation of chimeric capsular polysaccharides
The chimeric capsular polysaccharides of the invention can be provided in the form of a conjugate comprising (i) a chimeric capsular polysaccharide and (ii) a carrier protein. Thus, in certain embodiments, conjugates comprising (i) a capsular polysaccharide and (ii) a carrier protein, are characterized in that the capsular polysaccharide comprises at least one oligosaccharide UR of a first serotype of GBS capsular polysaccharide and at least one oligosaccharide UR of a second serotype of GBS capsular polysaccharide and optionally, at least one oligosaccharide UR of a third serotype of GBS capsular polysaccharide in which the oligosaccharide URs are joined by glycosidic bonds. In other embodiments, conjugates comprising (i) a capsular polysaccharide and (ii) a carrier protein, are characterized in that the capsular polysaccharide comprises at least one oligosaccharide UR of a first capsular polysaccharide serotype of Streptococcus pneumoniae and at least one oligosaccharide UR of a second serotype of Streptococcus pneumoniae capsular polysaccharide and optionally, at least one oligosaccharide UR of a third serotype of Streptococcus pneumoniae capsular polysaccharide in which the oligosaccharide URs are joined by glycosidic bonds. In general, the covalent conjugation of saccharides to carriers improves the immunogenicity of saccharides since it converts them from T-independent antigens to T-dependent antigens, thereby enabling sensitization of immunological memory. Conjugation is particularly useful for pediatric vaccines [eg reference 16] and is a well known technique [eg reviewed in references 17 to 25]. Thus, the methods of the invention may include the additional step of conjugating the purified saccharide to a carrier molecule.
The term "conjugate" refers to a chimeric capsular saccharide covalently linked to a carrier protein. In some embodiments, a chimeric capsular saccharide is directly linked to a carrier protein. In other embodiments, a chimeric capsular saccharide is indirectly linked to a protein through a spacer or linker. As used in this document, the term "directly linked" means that the two entities are connected by a chemical bond, preferably a covalent bond. As used in this document, the term "indirectly linked" means that the two entities are connected via a link moiety (as opposed to a direct covalent bond). In some embodiments, the linker is the diiprazide of adipic acid. Representative conjugates according to the present invention include those formed by joining the chimeric capsular polysaccharide to the carrier protein.
Covalent bonding of polysaccharides to proteins is known in the art and is generally accomplished by targeting amines of lysines, carboxylic groups of aspartic / glutamic acids or sulfhydryl groups of cysteines. For example, the cyanate esters formed randomly from the hydroxyl groups of sugar can be reacted with the lysines of the protein or the hydrazine of a spacer which are then condensed to the carboxylic acids of the carrier protein by the carbodiimide chemistry. Alternatively, the aldehydes generated on a polysaccharide purified by oxidation of the random periodate can either be used directly for the reductive amination on the amines of the carrier protein, or be converted into amines for the subsequent insertion of a spacer allowing the protein conjugation step via the formation of a thioether or amide bond. The glycoconjugates obtained by these methods have complex cross-linked structures. A strategy to simplify the structure of the final conjugate uses partial hydrolysis of the purified capsular polysaccharide and subsequent fractionation to select a population of intermediate chain length. A primary amino group can be introduced at the reducing ends of the oligosaccharide to be used ultimately for the insertion of a diester or a bifunctional linker ready for conjugation to the protein.
The term "carrier protein" refers to a protein to which the chimeric polysaccharide is coupled or attached or conjugated, typically to improve or facilitate the detection of the antigen by the immune system. Capsular polysaccharides are T-independent antigens that are weakly immunogenic and do not lead to long-term protective immune responses. The conjugation of the polysaccharide antigen to a carrier protein changes the context in which immune effector cells respond to polysaccharides. The term carrier protein is intended to cover both small peptides and large polypeptides (> 10 kDa). The carrier protein may include one or more T-helper epitopes. The peptide can be coupled to the carrier protein by any means such as chemical conjugation.
Preferred useful carrier proteins are toxoids or bacterial toxins, for example diphtheria toxoid or tetanus toxoid. Fragments of toxins or toxoids can also be used, for example, fragment C of tetanus toxoid [26]. The mutant CRM197 of diphtheria toxoid [27-29] is particularly useful with the invention. Other suitable carrier proteins include N. meningitidis outer membrane protein [30], synthetic peptides [31, 32], heat shock proteins [33, 34], pertussis proteins [35, 36] , cytokines [37], lymphokines [37], hormones [37], growth factors [37], human serum albumin (preferably recombinant), artificial proteins comprising multiple epitopes of CD4 + T cells of different antigens derived from pathogens [38] for example N19 [39], protein D from H. influenzae [40, 41], the pneumococcal surface protein PspA [42], pneumolysin [43], iron capture proteins [44], toxin A or B from C. difficile [45], exoprotein A recombinant of Pseudomonas aeruginosa (rEPA) [46], a GBS protein [123], etc.
Particularly suitable carrier proteins include CRM197, tetanus toxoid (TT), fragment C of tetanus toxoid, protein D, non-toxic mutants of tetanus toxin and diphtheria toxoid (DT). It has been observed that pre-exposure to the carrier could, in some cases, lead to a reduction in the anti-carbohydrate immune response against glycoconjugate vaccines (suppression of the epitope of the carrier). The use of variants to DT, TT and CRM197, generally used in the manufacture of most glycoconjugate vaccines currently on the market, could be one way of avoiding this possibility. Other suitable carrier proteins include the protein antigens GBS80, GBS67 and GBS59 of Streptococcus agalactiae. Other suitable carrier proteins include fusion proteins, for example, GBS59 (6xD3) disclosed in WO2011 / 121576 and GBS59 (6xD3) -1523 disclosed in EP14179945.2. The use of these GBS protein antigens may be advantageous for a GBS vaccine because, unlike heterologous carriers such as CRM197, the protein has a dual role of increasing the immunogenicity of the polysaccharide while also causing a response protective immune. Therefore, the elicited immune response against the carrier can provide an additional protective immunological response against GBS, particularly against an GBS protein.
Conjugation of GBS saccharides has been widely reported, for example, see reference 1. The conventional prior art method for conjugation of GBS saccharide typically involves the reductive amination of a purified saccharide to a carrier protein, such as than tetanus toxoid (TT) or CRM197 [2]. Reductive amination involves an amino group on the side chain of an amino acid in the support and an aldehyde group in the saccharide. An aldehyde group can be generated before the conjugation by oxidation (for example, periodate oxidation) of a part (for example, between 5 and 40%, particularly between 10 and 30%, preferably about 20%) of the sialic acid residues saccharide [2, 47]. A variant conjugation process involves the use of -NH2 groups in the saccharide (either de-N-acetylation or after the introduction of amines) together with bifunctional linkers, as described in the reference 48. In some embodiments, one or more of the conjugates of the present invention have been prepared in this manner. Another variant of the process is described in document WO96 / 40795 and by Michon et al. (2006) Clin Vaccine Immunol 2006 August; 13 (8): 936-43.
Attachment to the support is preferably via an -NH2 group, for example, in the side chain of a lysine residue in a carrier protein, or of an arginine residue, or at the N-terminus. The attachment can also be carried out via a -SH group, for example, in the side chain of a cysteine residue.
Conjugates with a saccharide / protein ratio (w / w) between 1/5 (in other words excess protein) and 5/1 (in other words excess saccharide) are typically used, in particular ratios included between 1/5 and 2/1, between approximately 1/1 and 1/2, particularly approximately 1 / 1.3, between approximately 1/1 and 1/2, in particular approximately 1 / 1.3, between approximately 3/1 and 1/1, in particular approximately 2/1, between approximately 1/1 and 1/5, in particular approximately 1 / 3.3, between approximately 2/1 and 1/1, in particular about 1.1 / 1. Thus, an excess in weight of saccharide is typical, in particular with longer saccharide chains.
The compositions may include a small amount of free support [49]. When a given carrier protein is present in its free form and in its conjugated form in a composition of the invention, the unconjugated form preferably does not represent more than 5% of the total amount of the carrier protein in the composition in all of it, and is more preferably present at less than 2% by weight.
After conjugation, free and conjugated saccharides can be separated. There are a large number of suitable methods, including hydrophobic chromatography, tangential ultrafiltration, diafiltration etc. [see also references 50 & 51, etc.]. A preferred method is described in reference 52.
Immunogenic compositions
In one embodiment, the invention relates to an immunogenic composition comprising a conjugate which is a chimeric capsular saccharide of the invention conjugated to a carrier protein. The immunogenic compositions may include more than one conjugate. The embodiments of the invention can comprise two, three, four, five or six conjugates comprising different types of chimeric capsular polysaccharides.
In some embodiments, the immunogenic compositions will not include conjugates other than those specifically mentioned. However, in some embodiments, the compositions may include other conjugates. The immunogenic compositions can comprise any appropriate quantity of the chimeric capsular saccharide (s) per unit dose. Appropriate amounts of the capsular saccharide (s) can vary from 0.1 to 50 µg per unit dose. Typically, each chimeric capsular saccharide is present in an amount of 1 to 30 pg, for example 2 to 25 pg, and in particular 5 to 20 pg. Appropriate amounts of the capsular saccharide (s) may include 5, 10 and 20 µg per unit dose.
Methods of administering the immunogenic compositions of the invention are discussed below. Briefly, the immunogenic compositions of the invention can be administered in single or multiple doses. The inventors have discovered that administration of a single dose of the immunogenic compositions of the invention is effective. Alternatively, a unit dose followed by a second unit dose may be effective. Typically, the second (or third, fourth, fifth, etc.) unit dose is identical to the first unit dose. The second unit dose can be administered at an appropriate time after the first unit dose, especially after 1, 2 or 3 months. Typically, the immunogenic compositions of the invention will be administered intramuscularly, for example, by intramuscular administration into the thigh or the arm as described above.
The immunogenic compositions of the invention may include one or more adjuvants. However, the use of non-adjuvanted compositions is also contemplated, for example, it may be advantageous not to include an adjuvant in order to reduce the potential toxicity. Consequently, immunogenic compositions which contain no adjuvant at all or which do not contain aluminum salt adjuvant are contemplated.
Combinations of conjugates and other antigens
The immunogenic compositions of the invention may include one or more additional antigens.
The additional antigen (s) may further comprise GBS conjugates. Different GBS conjugates may include different types of conjugates of the same GBS serotype and / or conjugates of different GBS serotypes. The composition will typically be produced by preparing separate conjugates (for example, a different conjugate for each serotype) and then by combining the conjugates.
The additional antigen (s) can include GBS amino acid sequences, as set out below.
The additional antigen (s) may include antigens from pathogens other than GBS. Thus, the immunogenic compositions of the invention may further comprise one or more antigens other than GBS, including additional bacterial, viral or parasitic antigens. These can be selected from the following: - a protein antigen of N. meningitidis serogroup B, for example those proposed in references 53 to 59, with the protein '287' (see below) and its derivatives (for example , 'Δ287') being particularly preferred. a preparation based on external membrane vesicles (OMV) of N. meningitidis serogroup B, such as those described in references 60, 61, 62, 63 etc. - a saccharide antigen of N. meningitidis serogroup A, C, W135 and / or Y, such as the oligosaccharides described in reference 64 of serogroup C or the oligosaccharides of reference 65. - a saccharide antigen of Streptococcus pneumoniae [for example, references 66-68; chapter 22 & 23 of reference 75]. - a hepatitis A virus antigen, for example an inactivated virus [for example, 69, 70; chapter 15 of reference 75]. - a hepatitis B virus antigen, such as surface and / or capsid antigens [for example, 70, 71; chapter 16 of reference 75]. - a hepatitis C virus antigen [for example, 72]. - a Bordetella pertussis antigen, such as pertussis holotoxin (PT) and filamentous hemagglutinin (FHA) from B. pertussis, optionally also in combination with pertactin and / or agglutinogens 2 and 3 [for example, references 73 &74; chapter 21 of reference 75]. - a diphtheria antigen, such as a diphtheria toxoid (for example, chapter 13 of reference 75]. - a tetanus antigen, such as a tetanus toxoid [for example, chapter 27 of reference 75]. - a Haemophilus influenzae B saccharide antigen [eg chapter 14 of ref. 75] - an antigen of N. gonorrhoeae [eg 53, 54, 55] - an antigen of Chlamydia pneumoniae [eg 76, 77, 78, 79, 80, 81, 82] - a Chlamydia trachomatis antigen [for example 83] - a Porphyromonas gingivalis antigen [for example 84] - a polio antigen (s) [ for example, 85, 86; chapter 24 of reference 75] for example IPV - rabies antigen (s) [for example 87] such as a lyophilized inactivated virus [for example 88 RabAvert ™] - antigens from measles, mumps and / or rubella [eg chapters 19, 20 and 26 of ref. 75] - one (s) influenza antigen (s) [by e xample, chapter 17 & 18 of reference 75], such as hemagglutinin and / or neuraminidase surface proteins. - a Moraxella catarrhalis antigen [for example, 89]. - a Streptococcus pyogenes antigen (group A streptococcus) (eg 90, 91, 92). - a Staphylococcus aureus antigen [for example, 93].
When a saccharide or carbohydrate antigen is used, it is preferably conjugated to a carrier to improve immunogenicity. The conjugation of the H. influenzae B, meningococcal and pneumococcal saccharide antigens is well known. Toxic protein antigens can be detoxified if necessary (eg detoxification of pertussis toxin by chemical and / or genetic means [74]).
When a diphtheria antigen is included in the composition, a tetanus antigen and at least one pertussis antigen can also be included. Similarly, when a tetanus antigen is included, diphtheria and pertussis antigens can also be included. Similarly, when a pertussis antigen is included, diphtheria and tetanus antigens can also be included.
The antigens can be adsorbed to an aluminum salt. When there is more than one conjugate in a composition, it does not have to be all absorbed.
A preferred type of composition includes other antigens of sexually transmitted pathogens, such as: herpes virus; N. gonorrhoeae; C. trachomatis; etc. Another type of preferred composition comprises other antigens which affect the elderly and / or immunocompromised, and thus the GBS antigens of the invention can be combined with one or more antigens of the following non-GBS pathogens: influenza virus, Enterococcus faecalis, Staphylococcus aureus, Staphylococcus epidermis, Pseudomonas aeruginosa, Legionella pneumophila, Listeria monocytogenes, Neisseria meningitidis, and parainfluenza virus.
The antigens in the composition will typically be present in a concentration of at least 1 pg / mL each. In general, the concentration of any given antigen will be sufficient to elicit an immune response against that antigen.
As an alternative to the use of protein antigens in the composition of the invention, the nucleic acid coding for the antigen can be used [for example, references 94 to 102]. The protein components of the compositions of the invention can thus be replaced by a nucleic acid (preferably DNA for example in the form of a plasmid) which codes for the protein.
In practical terms, there may be an upper limit on the number of antigens included in the compositions of the invention. The number of antigens (including GBS antigens) in a composition of the invention may be less than 20, less than 19, less than 18, less than 17, less than 16, less than 15, less than 14, less than 13, less than 12, less than 11, less than 10, less than 9, less than 8, less than 7, less than 6, less than 5, less than 4, less than 3, or less than 2. The number of GBS antigens in a composition of the invention may be less than 6, less than 5, less than 4, less than 3, or less than 2.
Pharmaceutical processes and uses
The immunogenic compositions of the invention may further comprise a pharmaceutically acceptable carrier. Typical "pharmaceutically acceptable carriers" include any carrier which does not itself induce the production of antibodies harmful to the individual receiving the composition. Suitable carriers are typically large, slowly metabolized macromolecules such as proteins, polysaccharides, polylactic acids, polyglycolic acids, polymeric amino acids, amino acid copolymers, sucrose [103], trehalose [104], lactose, and lipid aggregates (such as oil droplets or liposomes). These supports are well known to those skilled in the art. Vaccines can also contain diluents, such as water, saline, glycerol, etc. In addition, auxiliary substances, such as wetting or emulsifying agents, pH buffering substances, and the like, may be present. A physiological saline solution, phosphate buffered, pyrogen-free and sterile is a typical support. A detailed discussion of pharmaceutically acceptable excipients is available in reference 105.
The compositions of the invention can be in an aqueous form (in other words, solutions or suspensions) or in a dry form (for example, lyophilized). If a dry vaccine is used, then it will be reconstituted in a liquid medium before the injection. Lyophilization of conjugate vaccines is known in the art, for example the product Menjugate ™ is in lyophilized form. When the immunogenic compositions of the invention comprise conjugates comprising more than one type of chimeric capsular saccharide, it is typical that the conjugates are prepared separately, mixed and then lyophilized. In this way, lyophilized compositions comprising two, three or four etc. conjugates as described in this document can be prepared. To stabilize the conjugates during lyophilization, it may be preferred to include a polyol (for example, mannitol) and / or a disaccharide (for example, sucrose or trehalose) for example between 1 mg / mL and 30 mg / mL (for example, about 25 mg / mL) in the composition. The use of sucrose has been recommended as a stabilizer for GBS conjugate vaccines (Reference 106). However, it is typical that the stabilizer of the present invention is mannitol. When the dry vaccine is reconstituted in a liquid medium before injection, the concentration of residual mannitol will typically be about 2 to 20 mg / ml, for example, 3.75 mg / ml, 7.5 mg / ml or 15 mg / mL. The use of mannitol is advantageous because mannitol is chemically different from the monosaccharide repeat units of GBS capsular saccharides. This means that the detection of capsular saccharides, for example, for quality control analysis, can be based on the presence of repeated units of the saccharides without interference from mannitol. In contrast, a stabilizer such as sucrose contains glucose, which can interfere with the detection of repeat units of glucose in saccharides.
The compositions can be presented in vials, or they can be presented in pre-filled syringes. Syringes may or may not have needles. A syringe will comprise a single dose of the composition, while a vial may comprise a single dose or multiple doses.
The aqueous compositions of the invention are also suitable for the reconstitution of other vaccines from a lyophilized form. When a composition of the invention is intended to be used for such an extemporaneous reconstitution, the invention provides a kit, which can comprise two vials, or can comprise a pre-filled syringe and a vial, the contents of the syringe being used to reactivate the contents of the vial before injection.
The compositions of the invention can be packaged as a single dose or as multiple doses. For multiple dose forms, vials are preferred to pre-filled syringes. Effective dosage volumes can be established routinely, but a typical human dose of the composition has a volume of 0.5 mL for example, for intramuscular injection.
The pH of the composition is preferably between 6 and 8, and is preferably around 7. The pH can be kept stable by the use of a buffer. The immunogenic compositions of the invention typically include a potassium dihydrogen phosphate buffer. The potassium dihydrogen phosphate buffer may comprise about 1 to 10 mM potassium dihydrogen phosphate, for example, 1.25 mM, 2.5 mM or 5.0 mM. If a composition comprises an aluminum hydroxide salt, it is preferred to use a histidine buffer [107]. The composition can be sterile and / or pyrogen-free. The compositions of the invention can be isotonic relative to humans.
The compositions of the invention are immunogenic, and are more preferably vaccine compositions. The vaccines according to the invention can be either prophylactic (in other words, they prevent infection) or therapeutic (in other words, they treat infection), but they will typically be prophylactic. The immunogenic compositions used as vaccines include an immunologically effective amount of antigen (s), as well as other components, as needed. By "immunologically effective amount" is meant that the administration of this amount to an individual, in a single dose or as part of a series of doses, is effective for treatment or prevention. This amount varies depending on the health and physical condition of the individual to be treated, the age, the taxonomic group of the individual to be treated (for example, a non-human primate, a primate, etc.), the ability of the individual's immune system to synthesize antibodies, the level of protection desired, the formulation of the vaccine, the medical practitioner's assessment of the medical situation, and other relevant factors. It is expected that a therapeutically effective amount will fall within a relatively wide range which can be determined by routine testing. Within each dose, the amount of an individual saccharide antigen will generally be between 0.1 and 50 pg (measured as the mass of saccharide), especially between 1 and 50 pg or 0.5 and 25 pg, more particularly between 2.5 and 7.5 pg, for example, about 1 pg, about 2.5 pg, about 5 pg, about 10 pg, about 15 pg, about 20 pg or about 25 pg. Within each dose, the total amount of chimeric capsular saccharides will generally be d 70 pg (measured as the mass of saccharide), for example, d 60 pg. In particular, the total amount can be d 40 pg (for example, d 30 pg) or d 20 pg (for example, d 15 pg). It may be advantageous to minimize the total amount of chimeric capsular saccharide (s) per unit dose so as to reduce potential toxicity. Accordingly, a total amount of 20 pg can be used, for example, d 15 pg, d 7.5 pg or d 1.5 pg.
GBS and Streptococcus pneumoniae affect different areas of the body and thus the compositions of the invention can be prepared in different forms. For example, the compositions can be prepared in the form of injectables, either as solutions or as liquid suspensions. The composition can be prepared for pulmonary administration, for example, in the form of an inhaler, using a fine powder or a spray. The composition can be prepared in the form of a suppository or a pessary. The composition can be prepared for nasal, ear or eye administration, for example, in the form of a spray, drops, gel or powder [for example, references 108 & 109]. The success of nasal administration of pneumococcal saccharides [110, 111], saccarides Hib [112], saccharides
MenC [113], and mixtures of Hib and MenC saccharide conjugates [114] have been reported.
The compositions of the invention may include an antimicrobial, especially when packaged in a multiple dose format. The compositions of the invention may include a detergent, for example, a Tween (polysorbate), such as Tween 80. Detergents are generally present at low levels, for example, <0.01%. The compositions of the invention may include sodium salts (eg, sodium chloride) to impart tone. A concentration of 10 ± 2 mg / mL NaCl is typical. In some embodiments, a concentration of 4 to 10 mg / mL of NaCl can be used, for example, 9.0, 7.0, 6.75 or 4.5 mg / mL. The compositions of the invention will generally include a tampon. A phosphate buffer is typical. The compositions of the invention can be administered in conjunction with other immunoregulatory agents. In particular, the compositions can comprise one or more adjuvants. These adjuvants are known in the art and include, without limitation, aluminum salts such as alum and MF59.
Method of treatment The invention also relates to a method for developing an immune response in an appropriate mammal, comprising administering a pharmaceutical composition of the invention to the mammal. The immune response is preferably protective and preferably involves antibodies. More particularly, the immune response is protective against at least two different GBS serotypes and preferably involves antibodies against at least two GBS serotypes respectively. The process can induce an anamnestic response.
The suitable mammal is preferably a human. When the vaccine is intended for prophylactic use, humans are preferably children (for example, young children or infants) or adolescents; when the vaccine is intended for therapeutic use, the human being is preferably an adult. A vaccine for a child can also be given to adults, for example, to assess tolerance, dosage, immunogenicity, etc. A preferred class of humans for treatment is represented by women of childbearing age (for example, adolescent girls and older women). Another preferred class includes pregnant women. Elderly patients (for example, those over 50, 60, 70, 80 or 90 etc., especially over 65), especially those living in nursing homes where the risk of infection with GBS may be increased ([115]), are another preferred class of humans for treatment. Newborn babies of women with undetectable level (s) of antibody to GBS capsular saccharide (s) may have higher rates of GBS infection . This is due to the fact that higher levels of maternal antibodies to saccharides are correlated with a reduced risk of disease in newborns [references 116 and 117]. Accordingly, administration to these women is specifically contemplated in the present invention. The invention also relates to a composition of the invention for use as a medicament, for example, a vaccine. The drug is preferably capable of mounting an immune response in an appropriate mammal (in other words, it is an immunogenic composition) and it is more preferably a vaccine. The invention further relates to the use of a composition of the invention in the manufacture of a medicament for mounting an immune response in an appropriate mammal.
These uses and methods can be intended for the prevention and / or treatment of a disease caused by S. agalactiae for example, neonatal sepsis or bacteremia, neonatal pneumonia, neonatal meningitis, endometritis, osteomyelitis , septic arthritis, etc. These uses and methods are preferably for the prevention and / or treatment of a disease caused by S. pneumoniae, for example, bronchitis, rhinitis, acute sinusitis, otitis media, conjunctivitis, meningitis, bacteremia, sepsis, osteomyelitis, septic arthritis, endocarditis, peritonitis, pericarditis, cellulitis, and a brain abscess.
The subject in whom the disease is the subject of prevention may not be the same as the subject who receives the conjugate of the invention. For example, a conjugate can be given to a woman (before or during pregnancy) to protect her offspring (called "maternal immunization" [118120]).
One way to verify the effectiveness of therapeutic treatment involves monitoring for GBS infection after administration of the composition of the invention. One way to verify the effectiveness of prophylactic treatment involves monitoring the immune responses against, for example, GBS antigens after administration of the composition.
The preferred compositions of the invention can confer an antibody titer on a patient which is greater than the seroprotection criterion for each antigenic component for an acceptable percentage of human subjects. Antigens with an associated antibody titer above which a host is considered seroconverted against the antigen are well known, and these titles are published by organizations such as WHO. Preferably, more than 80% of a statistically significant sample of subjects is seroconverted, more preferably more than 90%, even more preferably more than 93% and ideally from 96 to 100%.
The compositions of the invention will generally be administered directly to a patient. Direct administration can be by parenteral injection (e.g., subcutaneous, intraperitoneal, intravenous, intramuscular, or into the interstitial space of tissue), or by rectal, oral, vaginal, topical, transdermal, intranasal administration , ocular, auricular, pulmonary or other mucous membrane. Intramuscular administration into the thigh or the arm is preferred. The injection can be done via a needle (for example, a hypodermic needle), but needle-less injection can alternatively be used. A typical intramuscular dose is 0.5 mL. The invention can be used to elicit systemic and / or mucosal immunity.
The dosage regimen may be a single dose regimen or a multiple dose regimen. Multiple doses can be used in a primary immunization regimen and / or a booster immunization regimen. A primary dose regimen may be followed by a booster dose regimen. An appropriate interval between sensitization doses (for example between 4 and 16 weeks) and between sensitization and booster can be determined routinely.
GBS protein antigens
As mentioned above, for protection against GBS, GBS proteins can be included in compositions of the invention. These can be used as carrier proteins for the conjugates of the invention, as carrier proteins for other conjugates, or as unconjugated protein antigens.
The GBS protein antigens for their use with the invention also include those described in references 90 and 121 to 123. Two particular GBS protein antigens for their use with the invention are known as: GBS67; and GBS80 [see reference 90]. Another preferred GBS protein antigen for use with the invention is known as Spb1 [see reference 124]. GBS fusion proteins particular for use in the invention include GBS59 (6xD3) and GBS59 (6xD3) -1523. Further details relating to these antigens are provided below.
The sequences of these proteins are provided in SEQ ID NO: 1 to 22 in this document. The compositions of the invention may comprise (a) a polypeptide comprising an amino acid sequence selected from SEQ ID NO: 1 to 22, and / or (b) a polypeptide comprising (i) an amino acid sequence which exhibits a sequence identity with one or
The compositions of the invention can also include mixtures of these GBS protein antigens.
In particular, the compositions of the invention can comprise: (a1) a polypeptide comprising an amino acid sequence of SEQ ID NO: 1, and / or (b1) a polypeptide comprising (i) an amino acid sequence which has a sequence identity with SEQ ID NO: 1 and / or (ii) a fragment of SEQ ID NO: 1; (a2) a polypeptide comprising an amino acid sequence of SEQ ID NO: 7, and / or (b2) a polypeptide comprising (i) an amino acid sequence which has a sequence identity with SEQ ID NO: 7 and / or (ii) a fragment of SEQ ID NO: 7; and (a3) a polypeptide comprising an amino acid sequence of SEQ ID NO: 13, and / or (b3) a polypeptide comprising (i) an amino acid sequence which has a sequence identity with SEQ ID NO: 13 and / or (ii) a fragment of SEQ ID NO: 13; and (a4) a polypeptide comprising an amino acid sequence of SEQ ID NO: 17, and / or (b3) a polypeptide comprising (i) an amino acid sequence which has a sequence identity with SEQ ID NO: 17 ; and (as) a polypeptide comprising an amino acid sequence of SEQ ID NO: 22, and / or (b3) a polypeptide comprising (i) an amino acid sequence which has a sequence identity with SEQ ID NO: 22 .
Depending on the particular SEQ ID NO, the degree of sequence identity in (i) is preferably greater than 50% (e.g. 60%, 70%, 75%, 80%, 85%, 90%, 91 %, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more). These polypeptides include homologs, orthologs, allelic variants and functional mutants. Typically, an identity of 50% or more between two polypeptide sequences is taken as an indication of functional equivalence. The identity between the polypeptides is preferably determined by the Smith-Waterman homology search algorithm as implemented in the MPSRCH (Oxford Molecular) program, using an affine gap search with the penalty parameters. gap opening = 12 and gap extension penalty = 1.
Depending on the particular SEQ ID NO, the fragments of (ii) should comprise at least n consecutive amino acids of the sequences and, depending on the particular sequence, n is 7 or more (for example, 8, 10, 12, 14 , 16, 18, 20, 22, 24, 26, 28, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100 or more). The fragment can comprise at least one T cell epitope or, preferably, one B cell epitope of the sequence. T and B cell epitopes can be identified empirically (eg, using PEPSCAN [125, 126] or similar methods), or they can be predicted (eg, using Jameson-Wolf antigenic indexing [127 ], matrix-based approaches [128], TEPITOPE [129], neural networks [130], OptiMer &amp; EpiMer [131, 132], ADEPT [133], Tsites [134], hydrophilicity [135] , antigenic indexing [136] or the methods described in reference 137 etc.). The removal of one or more domains, for example the N-terminal signal peptide, a signal or leader sequence region, a transmembrane region, a cytoplasmic region or a cell wall anchor pattern can be used.
These polypeptides can, compared to SEQ ID NO: 1 to 22, comprise one or more (for example, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, etc.) amino acid replacements preservatives, in other words, replacements of one amino acid with another that has a related side chain. Genetically encoded amino acids are generally divided into four families: (1) acids, in other words, aspartate, glutamate; (2) basic, in other words, lysine, arginine, histidine; (3) non-polar, in other words, alanine, valine, leucine, isoleucine, proline, phenylalanine, methionine, tryptophan; and (4) uncharged polar, in other words, glycine, asparagine, glutamine, cystine, serine, threonine, tyrosine. Phenylalanine, tryptophan, and tyrosine are sometimes classified jointly as aromatic amino acids. In general, the substitution of single amino acids within these families has no major effect on biological activity. The polypeptides can also include one or more (e.g., 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, etc.) single amino acid deletions can also include one or more (e.g. , 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, etc.) insertions (for example, each of 1, 2, 3, 4 or 5 amino acids) relative to SEQ ID NO: 1 at 22.
The polypeptides of the invention can be prepared in a large number of ways, for example, by chemical synthesis (in whole or in part), by digestion of longer polypeptides using proteases, by translation from RNA, by purification of a cell culture (for example, expression by recombination), of the organism itself (for example, after a bacterial culture, or directly from patients), etc. A preferred method of producing peptides <40 amino acids in length involves chemical synthesis in vitro [138, 139]. Solid phase peptide synthesis is particularly preferred, for example methods based on Boc or Fmoc chemistry [140]. The enzymatic synthesis [141] can also be used in part or in whole. As an alternative to chemical synthesis, biological synthesis can be used, for example, polypeptides can be produced by translation. This can be done in vitro or in vivo. Biological processes are generally limited to the production of L-amino acid-based polypeptides, but manipulation of the translation machinery (e.g., aminoacyl-tRNA molecules) can be used to allow the introduction of D-amino acids (or other unnatural amino acids, such as iodotyrosine or methylphenylalanine, azidohomoalanine, etc.) [142].
When D-amino acids are included, however, it is preferred to use chemical synthesis. The polypeptides of the invention may have covalent modifications at the C-terminus and / or the N-terminus.
If these GBS proteins are included in the compositions of the invention, then they can take different forms (for example, native, fusions, glycosylated, non-glycosylated, lipid, non-lipid, phosphorylated, non phosphorylated, myristoylated, non myristoylated, monomers , multimers, particulate, denatured, etc.). They are preferably used in a purified or substantially purified form, in other words, substantially devoid of other polypeptides (for example, devoid of natural polypeptides), in particular other polypeptides of the GBS or of host cells). GBS67
The nucleotide and amino acid sequences of GBS67 sequenced from the strain 2603 V / R serotype V are set out in reference 90 as SEQ ID NO: 3745 &amp; 3746. The amino acid sequence is SEQ ID NO: 1 in this document:
MRKYQKFSKILTLSLFCLSQIPLNTNVLGESTVPENGAKGKLWKKTDDQNKPLSKATFVLKTTAHPESKIEKVTAELT GEATFDNLIPGDYTLSEETAPEGYKKTNQTWQVKVESNGKTTIQNSGDKNSTIGQNQEELDKQYPPTGIYEDTKESYKL EHVKGSVPNGKSEAKAVNPYSSEGEHIREIPEGTLSKRISEVGDLAHNKYKIELTVSGKTIVKPVDKQKPLDVVFVLDN SNSMNNDGPNFQRHNKAKKAAEALGTAVKDILGANSDNRVALVTYGSDIFDGRSVDVVKGFKEDDKYYGLQTKFTIQTE NYSHKQLTNNAEEIIKRIPTEAPKAKWGSTTNGLTPEQQKEYYESKVGETFTMKAFMEADDILSQVNRNSQKIIVHVTD GVPTRSYAINNFKLGASYESQFEQMKKNGYLNKSNFLLTDKPEDIKGNGESYFLFPLDSYQTQIISGNLQKLHYLDLNL NYPKGTIYRNGPVKEHGTPTKLYINSLKQKNYDIFNFGIDISGFRQVYNEEYKKNQDGTFQKLKEEAFKLSDGEITELM RSFSSKPEYYTPIVTSADTSNNEILSKIQQQFETILTKENSIVNGTIEDPMGDKINLQLGNGQTLQPSDYTLQGNDGSV MKDGIATGGPNNDGGILKGVKLEYIGNKLYVRGLNLGEGQKVTLTYDVKLDDSFISNKFYDTNGRTTLNPKSEDPNTLR DFPIPKIRDVREYPTITIKNEKKLGEIEFIKVDKDNNKLLLKGATFELQEFNEDYKLYLPIKNNNSKWTGENGKISYK DLKDGKYQLIEAVSPEDYQKITNKPILTFEWKGSIKNIIAVNKQISEYHEEGDKHLITNTHIPPKGIJRMYGGKGILS FILIGGAMMSIAGGIYIWKRYKKSSDMSIKKD GBS67 contains a C-terminal transmembrane region which is indicated by the area s or line closest to the C-terminus of SEQ ID NO: 1 above. One or more amino acids from the transmembrane region can be removed, or the amino acid can be truncated before the transmembrane region. An example of such a GBS67 fragment is set out below as SEQ ID NO: 2.
MRKYQKFSKILTLSLFCLSQIPLNTNVLGESTVPENGAKGKLWKKTDDQNKPLSKATFVLKTTAHPESKIEKVTAELT GEATFDNLIPGDYTLSEETAPEGYKKTNQTWQVKVESNGKTTIQNSGDKNSTIGQNQEELDKQYPPTGIYEDTKESYKL EHVKGSVPNGKSEAKAVNPYSSEGEHIREIPEGTLSKRISEVGDLAHNKYKIELTVSGKTIVKPVDKQKPLDWFVLDN SNSMNNDGPNFQRHNKAKKAAEALGTAVKDILGANSDNRVALVTYGSDIFDGRSVDWKGFKEDDKYYGLQTKFTIQTE NYSHKQLTNNAEEIIKRIPTEAPKAKWGSTTNGLTPEQQKEYYLSKVGETFTMKAFMEADDILSQVNRNSQKIIVHVTD GVPTRSYAINNFKLGASYESQFEQMKKNGYLNKSNFLLTDKPEDIKGNGESYFLFPLDSYQTQIISGNLQKLHYLDLNL NYPKGTIYRNGPVKEHGTPTKLYINSLKQKNYDIFNFGIDISGFRQVYNEEYKKNQDGTFQKLKEEAFKLSDGEITELM RSFSSKPEYYTPIVTSADTSNNEILSKIQQQFETILTKENSIVNGTIEDPMGDKINLQLGNGQTLQPSDYTLQGNDGSV MKDGIATGGPNNDGGILKGVKLEYIGNKLYVRGLNLGEGQKVTLTYDVKLDDSFISNKFYDTNGRTTLNPKSEDPNTLR DFPIPKIRDVREYPTITIKNEKKLGEIEFIKVDKDNNKLLLKGATFELQEFNEDYKLYLPIKNNNSKWTGENGKISYK DLKDGKYQLIEAVSPEDYQKITNKPILTFEWKGSIKNIIAVNKQISEYHEEGDKHLITNTHIPPKGIIPMTGGKGILS GBS67 contains an amino acid motif indicative of a cell wall anchor to the presented in italics in SEQ ID NO: 1 above. In some recombinant host cell systems, it may be preferable to remove this motif to facilitate secretion of a recombinant GBS67 protein from the host cell. Consequently, in a preferred fragment of GBS67 for use in the invention, the transmembrane region and the anchor pattern to the cell wall are removed from GBS67. An example of such a GBS67 fragment is set out below as SEQ ID NO: 3.
MRKYQKFSKILTLSLFCLSQIPLNTNVLGESTVPENGAKGKLWKKTDDQNKPLSKATFVLKTTAHPESKIEKVTAELT
GEATFDNLIPGDYTLSEETAPEGYKKTNQTWQVKVESNGKTTIQNSGDKNSTIGQNQEELDKQYPPTGIYEDTKESYKL
EHVKGSVPNGKSEAKAVNPYSSEGEHIREIPEGTLSKRISEVGDLAHNKYKIELTVSGKTIVKPVDKQKPLDWFVLDN
SNSMNNBGPNFQRHNKAKKAAFBYLGmYKBÏlGANSBNKVAXVTÏGSDIEBGRSVDWKGFKEBBKYYGIiQTKFTÏQTB
NYSHKQLTNNAEEIIKRlMESPKMWGSTTNGLTPEQQKEÏYESKŸGETîÎMKfiFMEADDILSQVNIWSQKIIVHV.TB βνΡΤΗ3; γδΙΝΝΕΚ16Α.3ΥΕ · 3ς | ®2ΜΚΕΝβΥΕΝΚ3ΝΕΕΕΤ0ΚΡΕΒΐΚί3Ν (3Ε ·ΥϊΤςΐΙδΥϊΕΕΒΕΒ3Υ2
.NYPKGTIYRNGPVKEHGTPTKLYINSLKQKNYDIFHFGIDISGFRQVYNEEYKKNQDGTFQKLKEEAEKLSDGEITELM Κ3Ρ33ΚΡΕΥΥΤΡΐνΤ5ΑαΓ5ΝΝΕΧ13ΚΙΟθ0ΕΕΤΙΕΕΤΙΤΚΕΝΤΚΕΝΐΕΟΕΟΕΟΕΟΕΟΚΕΕΎΙΚΕΕΎΙΗΙΧΚΕΕΎΙΗΙΧ)))))))))))
DFPIPKIRDVREYPTITIKNEKKLGEIEFIKVDKDNNKLLLKGATFELQEFNEDYKLYLPIKNNNSKVVTGENGKIS.YK
DLKBGKYQLIEAVSPEBYQKITNKPILTFEWKGSIKNIIAVNKQISEYHEEGDKHLITNTHIPPKGI
Alternatively, in some recombinant host cell systems, it may be preferable to use the cell wall anchor motif to anchor the expressed protein recombinantly to the cell wall. The extracellular domain of the expressed protein can be cleaved during purification or the recombinant protein can be left attached to inactivated host cells or cell membranes in the final composition.
Three pilin motifs, containing conserved lysine residues, have been identified in GBS67. The conserved lysine residues are located at amino acid residues 478 and 488, at amino acid residues 340 and 342, and at amino acid residues 703 and 717. The pilin sequences, in particular the conserved lysine residues, are believed to be important for the formation of GBS67 pilus-type oligomeric structures. Preferred GBS67 fragments include at least one conserved lysine residue. Two E boxes containing conserved glutamic residues were also identified in GBS67. Preferred GBS67 fragments include at least one conserved glutamic acid residue. GBS67 contains several regions which are predicted to form alpha helical structures. These alpha helical regions are likely to form helically wound structures and may be involved in the oligomerization of GBS67. GBS67 also contains a region which is homologous to the Cna_B domain of the collagen-binding surface protein of S. aureus (pfam05738). This can form a beta sandwich structure. GBS67 contains a region which is homologous to a domain of von Willebrand factor (vWF) type A.
The amino acid sequence of GBS67 sequenced from strain H36B serotype Ib is set out in reference 143 as SEQ ID NO: 20906. The amino acid sequence is SEQ ID NO: 4 in this document:
MRKYÔKFSKIIiTLSLF ^ IljSQÏPIifiTNVLGESTVPENGAKGKIiVVKRTDDQNKPLSKATFVtiKPTSHSESKVKKVTTEVT
GEATFDNLTPGDYTLSEETAPEGYKKT: TQTWGVKVESNGKITIQK [: SDDKKSIIEQRQEELDKQYPLTGAYEDTKESYNL
EHVKNSIPNGKLEAKAVNPYSSEGEHIREIQEGTLSKRISEVNDLDHNKYKIELTVSGKSIIKTINKDEPLDWFVLDN
SHSHKNNGKNNKaKKAGBAVETIIltDVliGANVENRSALVrYGSDIiTKiittVKVXKGFKEDPYYGIiETSFTVQTlïDYSYK
KFTNXAADIIKK'XPKEAPEAK reGYSIÆI, IPEKKREYDLSICVGETFTMKAF "E" PFI I.SSïQRKSRK3K: ¥ HI TW3S PXR
SYAIHSFVKGSTYANQFERIKEKGYLDKHNYFIÏDDP £ KIKGHGESYFLFPLDSÏQTQi: itSGin.QKÏ4UrLDLiII, NYPI0S
TIYRNGPVREHGTPTKLYINSLKQKNYDIFNFGIDISGFRQVYNEDYKKNQDGTFQKLKEEAFELSDGEITELMNSFSS
KPEYYTPIVTSKDVSHNEILSKIQQQFEKIIiTKENSIVNGTIEpPMGDKINI, HLGNGQTLQFSDYTLQGNDGSIMKDSI
MGGRNNBGGrEKGVKLEYIKNKLYVRGLNLGEGQKVTLTYDVKLDDSFISNKFYDTNGRTTLNEKSEEPDTLRDFPIP
KIRDVRÉYPTIT.IKNEKKLGEIEFTÏNDKDRNKLLLKGÀTFELQEFNEbŸKLŸLPXKNNNSKyVTGÈEGKISYKDLKDG
KYQLIEAVSPKDYQKITNKPILTFEWKGSIGNIIAVNKQISEYHEEGDKHLITNTEIPPKGIXRMXGSGKGILSFILIG
GAMMSIAGGIYIWKRHKKSSDASIEKD
In some embodiments, this variant of GBS67 can be used. Consequently, when embodiments of the present invention are defined in this document by reference to SEQ ID NO: 1, the references to SEQ ID NO: 1 may be replaced by references to SEQ ID NO: 4.
Like GBS67 sequenced from strain 2603 V / R serotype V, GBS67 sequenced from strain H36B serotype Ib contains a C-terminal transmembrane region which is indicated by the underlined region closest to the C-terminal end of SEQ ID NO: 2 above. One or more amino acids from the transmembrane region can be removed, or the amino acid can be truncated before the transmembrane region. An example of such a GBS67 fragment is set out below as SEQ ID NO: 5.
MRKYQKFSKILTLSLFCLSQIPLNTNVLGESTVPENGAKGKLWKKTDDQNKPLSKATFVLKPÏSHSESKVEKVTTEVT GEATFDNLTPGDYTLSEETAPEGYKKTTQTWQVKVESNGKTTIQNSDDKKSIIEQRQEELDKQYPLTGAYEDTKESYNL EHVKNSIPNGKLEAKAVNPYS SEGEHIREIQEGTLSKRISEVHDLDHNKYKIELTVSGKS11KTINKDE PLDWFVLDN SNSMKNNGKNNKAKKAGEAVE T11KDVLGANVEN.RAALVTYGSDIFDGRTVKVIKGFKEDPYYGLETS FTVQTNDYSYK KFTNIAADIIKKIPKEAPEAKWGGTSLGLTPEKKREYDLSKVGETFTMKAFMEADTLLSSIQRKSRKIIVHLTDGVPTR SYAINSFVKGSTYANQFERIKEKGYLDKNNYFITDDPEKIKGNGESYFLFPLDSYQTQIISGNLQKLHYLDLNLNYPKG TIYRNGPVREHGTPTKLYINSLKQKNYDIFNFGIDISGFRQVYNEDYKKNQDGTFQKLKEEAFELSDGEITELMNSFSS KPEYYTPIVTSADVSNNEILSKIQQQFEKILTKENSIVNGTIEDPMGDKINLHLGNGQTLQPSDYTLQGNDGSIMKDSI ATGGPNNDGGILKGVKLEYIKNKLYVRGLNLGEGQKVTLTYDVKLDDSFISNKFYDTNGRTTLNPKSEEPDTLRDFPIP KIRDVREYPTITIKNEKKLGEIEFTKVDKDNNKLLLKGATFELQEFNEDYKLYLPIKNNNSKWTGENGKISYKDLKDG KYQLIEAVS PKDYQKITNKPI LT FEWKGSIQNIIAVNKQIS EYHEEGDKHLITNTHIPPKGIIPMT GGKG ILS
Like GBS67 sequenced from strain 2603 V / R serotype V, GBS67 sequenced from strain H36B serotype Ib contains an amino acid motif indicating anchoring to the cell wall, presented in italics in SEQ ID NO: 4 above. Consequently, in a preferred fragment of GBS67 for use in the invention, the transmembrane region and the anchor pattern to the cell wall are removed from GBS67. An example of such a GBS67 fragment is set out below as SEQ ID NO: 6.
MRKYQKFSKILTLSLFCLSQIPLNTNVLGESTVPENGAKGKLWKKTDDQNKPLSKATFVLKPTSHSESKVEKVTTEVT GEATFDNLTPGDYTLSEETAPEGYKKTTQTWQVKVESNGKTTIQNSDDKKSIIEQRQEELDKQYPLTGAYEDTKESYNL EHVKNSI PNGKLEAKAVNPYS SEGEHI RE IQEGTLSKRISEVNDLDHNKYKIELTVSGKSIIKTINKDE PLDWFVLDN SNSMKNNGKNNKAKKAGEAVETIIKDVLGANVENRAALVTYGSDIFDGRTVKVIKGFKEDPYYGLETSFTVQTNDYSYK KFTNIAADIIKKIPKEAPEAKWGGTSLGLTPEKKREYDLSKVGETFTMKAFMEADTLLSSIQRKSRKIIVHLTDGVPTR SYAINSFVKGSTYANQFERIKEKGYLDKNNYFITDDPEKIKGNGESYFLFPLDSYQTQIISGNLQKLHYLDLNLNYPKG TIYRNGPVREHGTPTKLYINSLKQKNYDIFNFGIDISGFRQVYNEDYKKNQDGTFQKLKEEAFELSDGEITELMNSFSS KPEYYTPIVTSADVSNNEILSKIQQQFEKILTKENSIVNGTIEDPMGDKINLHLGNGQTLQPSDYTLQGNDGSIMKDSI ATGGPNNDGGILKGVKLEYIKNKLYVRGLNLGEGQKVTLTYDVKLDDSFISNKFYDTNGRTTLNPKSEEPDTLRDFPIP KIRDVREYPTITIKNEKKLGEIEFTKVDKDNNKLLLKGATFELQEFNEDYKLYLPIKNNNSKWTGENGKISYKDLKDG KYQLIEAVSPKDYQKI TNKPI LTFEWKGS IQNI IAVNKQISEYHEEGDKHLITNTHIPPKGI GBS8 0 GBS80 refers to a family protein anchor to the surface of the putative cell wall. The nucleotide and amino acid sequences of GBS80 sequenced from the isolated strain 2603 V / R serotype V are set out in reference 90 as SEQ ID NO: 8779 &amp; 8780. The amino acid sequence is set out below as SEQ ID NO: 7:
MKLSKKLLFSAAVLTMVAGSTVEPVAQFATGMSIVRAa.EVSQERPAKTTVMYKLQADSYKSEITSCIGGIENKDGEVIS · NYAKLGDNVKGLQGVQFKRYKVKTDISVDELKKLTTVEAADAKVGTILEEGVSLPQKTNAQGLWDALDSKSNVRYLYV EDLKNSPSNITKAYAVPFVLELPVANSTGTGFLSEINIYPKNWTDEPKTDKDVKKLGQDDAGYTIGEEFKWFLKSTIP ANLGDYEKFEITDKFADGLTYKSVGKIKIGSKTLNRDEHYTIDEPTVDNQNTLKITFKPEKFKEIAELLKGMTLVKNQD ALDKATANTDDAAFLEIPVASTINEKAVLGKAIENTFELQYDHTPDKADNPKPSNPPRKPEVHTGGKRFVKKDSTETQT LGGAEFDLLASDGTAVKWTDALIKANTNKNYIAGEAVTGQPIKLKSHTDGTFEIKGLAYAVDANAEGTAVTYKLKETKA PEGYVIPDKEIEFTVSQTSYNTKPTDITVDSADATPDTIKNNKRPSJPJJTGGIGTAIFVAIGAAVMAFAVKGMKRRTKD N GBS80 contains a signal sequence region or N-terminal head which is indicated by the underlined sequence above. One or more amino acids from the signal or leader region of GBS80 can be removed. An example of such a fragment of GBS80 is set out below as SEQ ID NO: 8:
AEVSQERPAKTTVNIYKLQADSYKSEITSNGGIENKDGEVISNYAKLGDNVKGLQGVQFKRYKVKTDISVDELKKLTTV
EAADAKVGTILEEGVSLPQKTNAQGLWDALDSKSNVRYLYVEDLKNSPSNITKAYAVPFVLELPVANSTGTGFLSEIN
IYPKNWTDEPKTDKDVKKLGQDDAGYTIGEEFKWFLKSTIPANLGDYEKFEITDKFADGLTYKSVGKIKIGSKTLNRD
EHYTIDEPTVDNQNTLKITFKPEKFKEIAELLKGMTLVKNQDALDKATANTDDAAFLEIPVASTINEKAVLGKAIENTF
ELQYDHTPDKADNPKPSNPPRKPEVHTGGKRFVKKDSTETQTLGGAEFDLLASDGTAVKWTDALIKANTNKNYIAGEAV
TGQPIKLKSHTDGTFEIKGLAYAVDANAEGTAVTYKLKETKAPEGYVIPDKEIEFTVSQTSYNTKPTDITVDSADATPD TIKNNKRPSIPNTGGIGTAIFVAIGAAVMAFAVKGMKRRTKDN GBS80 contains a transmembrane region C-terminus which is NO-terminated the region ID-SE which is NO indicated by the C-terminal region which is NO indicated by the following region: One or more amino acids from the transmembrane region and / or from a cytoplasmic region can be removed. An example of such a fragment is set out below as SEQ ID NO: 9:
MKLSKKLLFSAAVLTMVAGSTVEPVAQFATGMSIVRAAEVSQERPAKTTVNIYKLQADSYKSEITSNGGIENKDGEVIS NYAKLGDNVKGLQGVQFKRYKVKTDISVDELKKLTTVEAADAKVGTILEEGVSLPQKTNAQGLWDALDSKSNVRYLYV EDLKNSPSNITKAYAVPFVLELPVANSTGTGFLSEINIYPKNWTDEPKTDKDVKKLGQDDAGYTIGEEFKWFLKSTIP ANLGDYEKFEITDKFADGLTYKSVGKIKIGSKTLNRDEHYTIDEPTVDNQNTLKITFKPEKFKEIAELLKGMTLVKNQD ALDKATANTDDAAFLEIPVASTINEKAVLGKAIENTFELQYDHTPDKADNPKPSNPPRKPEVHTGGKRFVKKDSTETQT LGGAEFDLLASDGTAVKWTDALIKANTNKNYIAGEAVTGQPIKLKSHTDGTFEIKGLAYAVDANAEGTAVTYKLKETKA PEGYVIPDKEIE FTVSQTSYN TK PT DITVDSADAT PDTIKNNKRPSIPNTG GBS80 contains an amino acid motif indicative of a cell wall anchor to the presented in italics in SEQ ID NO: 7 above. In some recombinant host cell systems, it may be preferable to remove this motif to facilitate secretion of a recombinant GBS80 protein from the host cell. Thus, the transmembrane and / or cytoplasmic regions and the anchoring pattern to the cell wall can be removed from GBS80. An example of such a fragment is set out below as SEQ ID NO: 10.
MKLSKKLLFSAAVLTMVAGSTVEPVAQFATGMSIVRAAEVSQERPAKTTVNIYKLQADSYKSEITSNGGIENKDGEVIS
NYAKLGDNVKGLQGVQFKRYKVKTDISVDELKKLTTVEAADAKVGTILEEGVSLPQKTNAQGLWDALDSKSNVRYLYV
EDLKNSPSNITKAYAVPFVLELPVANSTGTGFLSEINIYPKNWTDEPKTDKDVKKLGQDDAGYTIGEEFKWFLKSTIP
jalLGDîEKFEItDKFADSJjTTKSVGKliiIGSKTœHDEaïïIDEPWDNiSITÆlTFKPEKFKEtXÔitîtGMTLVKlÎQD Aia KATAHTBDMFJÆIPV} &amp; STIHEKAVLGKAIENTFEï, QrDHTPDKADNPKPSNPFBKPHaH: GGKRFVKKDSTETQT LGGftEFDLLâ ^ GTAVKWTOASKAN'mKKYIftSEftVTGQPIKI.KSHJBGTFEXKGLA'fAVDANAEGTftirTYKLKBTKA PEGYV'IPDKEIEFTVSQTSYNTKP-TDITVDSADAT PDTIKNNKRPS
Alternatively, in some recombinant host cell systems, it may be preferable to use the cell wall anchor motif to anchor the expressed protein recombinantly to the cell wall. The extracellular domain of the expressed protein can be cleaved during purification or the recombinant protein can be left attached to inactivated host cells or cell membranes in the final composition. In one embodiment, the signal or leader sequence region, the transmembrane and cytoplasmic regions, and the cell wall anchor pattern are removed from the sequence.
AEVSQERPAKTTVNIYKLQAPSYKSEITSNGGIENKPGEVISNYAKLGPNVKGLQGVQFKRYKVKTDISVPELKKLTTV
EAAPAKVGTILEEGVSLPQKTNAQGLWPALPSKSNVRYLYVEPLKNSPSNITKAYAVPFVLELPVANSTGTGFLSEIN
IYPKNWTDEPKTDKDVKKLGQPDAGYTIGEEFKWFLKSTIPANLGDYEKFEITPKFAPGLTYKSVGKIKIGSKTLNRD
EHYTIPEPTVPNQNTLKITFKPEKFKEIAELLKGMTLVKNQPALDKATANTPPAAFLEIPVASTINEKAVLGKAIENTF
ELQYDHTPDKADNPKPSNPPRKPEVHTGGKRFVKKDSTETQTLGGAEFDLLASDGTAVKWTDALIKANTNKNYIAGEAV
TGQPIKLKSHTDGTFEIKGLAYAVDANAEGTAVTYKLKETKAPEGYVIPDKEIEFTVSQTSYNTKPTDITVDSADATPD
TIKNNKRPS
A particular immunogenic fragment of GBS80 is located in the direction of the N-terminal end of the protein, and is proposed in the present document as SEQ ID NO: 12:
AEVSQERPAKTTVNIYKLQADSYKSEITSNGGIENKDGEVISNYAKLGDNVKGLQGVQFKRYKVKTDISVDELKKLTTV EAADAKVGTILEEGVSLPQKTNAQGLWDALPSKSNVRYLYVEDLKNSPSNITKAYAVPFVLELPVANSTGTGFLSEIN IYPKMWTDEPKTDKDVKKLGQDDAGYTIGEEFKWFLKSTIPANLGDYEKFEITDKFADGLTYKSVGKIKIGSKTLNRD EHYTIDEPTVDNQNTLKITFKPEKFKEIAELLKG
SPB1
The wild-type SpbI sequence of the COH1 serotype III strain is SEQ ID NO: 13 in the present document:
ΜΚΚΚΜίς ^ ΕΕνΑΒΕΑΡΰΜΑνΞΡνΤΡΙΑΡΑΑΕΤΰΤΙΤνΰΡΤΏΚΟΑΤΥΚΑΥΚνΓΡΑΕΙΡΝΑΝνΞΡΞΝΚΡΰΑΕΥΕΙΡΰΟΚΕΑ EYKASTDFNSLFTTTTNGGRTYVTKKDTASANEIATWAKSISANTTPVSTVTESNNDGTEVINVSQYGYYYVSSTVNNG AVIMVTSVTPNATIHEKNTPATWGPGGGKTVPQKTYSVGPTVKYTITYKNAVNYHGTEKVYQYVIKPTMPSASWPLNE GSYEVTITDGSGNITTLTQGSEKATGKYNLLEENNNFTITIPWAATNTPTGNTQNGANPDFFYKGINTITVTYTGVLKS GAKPGSADLPENTNIATINPNTSNPPPGQKVTVRPGQITIKKIPGSTKASLQGAIFVLKNATGQFLNFNPTNNVEWGTE ANATEYTTGAPGIITITGLKEGTYYLVEKKAPLGYNLLDNSQKVILGDGATPTTNSPNLLVNPTVENNKGTEZPSrGGI GTTIFYIIGAILVIGAGIVLVARRRLRS
Wild-type SpbI contains an N-terminal signal or leader sequence region which is indicated by the underlined sequence (aa 1 to 29). One or more amino acids from the SpbI signal or leader region can be removed. An example of such a SpbI fragment is set out below as SEQ ID NO: 14:
AETGriTVQPTQKGATYKAYKVEDAEÏDNANVSDSNKDGASYLIPQGKEAEYKASTPFNSI.ETTT'MGGRTYVTKKDÏ'A
Sahei &amp; TWAKSISAiTCTÏVSWTESHNDGTjSrNVSQYGYYYVSSTVNNGAV'Qftra'SVTPNATIHEKNTDftTWGDGGGK
TVDQKTYSVGDTVKYTITYKNAVNYHGTEKVYQYVIKPTMPSASWDEEEGSYEVTITDGSGNITT.LTQGSEKATGKY.N
ÎiiiEENNNFTITIPWÀATNTPTGNTQNGANDDFFYKGINTITVTŸXGVLKSGÂKPGSADÏiPENTNIÀTÎNPNTSNDDBGQ
KVTVRDGQITIKKIDGSTKASLQGAIFVLKNATGQFLNFNPTNNVEWGTEANATEYTTGADGIITITGLKEGTYYLVEK
KAPLGYNLLDNSQKVILGDGATDTTNSDNLLVNPTVENNKGTEiPSrGGIGTTIFYIIGAILVIGAGIVLVARRRLRS
The wild type Spbl sequence contains an amino acid motif indicating cell wall anchoring (LPSTG). In some recombinant host cell systems, it may be preferable to remove this motif to facilitate secretion of a recombinant SpbI protein by the host cell. Thus, the anchor motif to the cell wall and the C-terminal sequence to this motif can be removed from SpbI. An example of such a fragment is set out below as SEQ ID NO: 15:
MKKKMIQSI, I VASLAFGMaVSPVTPIAFAAETGTITVQPTQKGATYKAYKVFDAE :: PNANVSDSNKPGASYLIPQGKEA
EYKASTDFNSLFTTTTNGGRTÏVTKKDTASANEIATWAKSISANTTPVSTVTESNNDGTEVINVSQYGYYYVSSTVNNG
AWIMVTSVTPteTIRËKNTDAfHGDGGGKTV'DQFTYSVGBWKYTITYKNAVNYBGTÈRVYQYUIKPTMESASÎVPLNE
GSYEVriTDGSGNITTBIQGSEKATGKYNEBEENNNFTITipWAATNTPTGN.TQNGANPDFFYKGINTrTVJYTGyLIiS
GAKPGSADLEENTNIATINPNTSNDDPGQKVTVRDGQITIKKIDGSTKASLQGAIFVLKNATGQFLNFNDTNNVEWGTE ΑΝΑΤΕΥΤΤ0ΑΡ6ΙΙΤΙΤ01ΚΕ6ΤΥΥΐνΕΚΚΑΡ16ΥΝΕ1ΡΗ50ΚνΐΕ6Ρ5ΑΤΡΤΤΝ5ΡΝΡΒνΝΡΤνΕΝΝΚ0ΤΕ
Alternatively, in some recombinant host cell systems, it may be preferable to use the cell wall anchor pattern to anchor the protein expressed recombinantly to the cell wall. The extracellular domain of the expressed protein can be cleaved during purification or the recombinant protein can be left attached to inactivated host cells or cell membranes in the final composition. In one embodiment, the signal or leader sequence region, the cell wall anchor motif and the C-terminal sequence to this motif are removed from SpbI.
AETGTrTVQDTQKGATYKAYKVFDAEIDNANVSDSNKDGASYLIPQGKEAEYKASTDFNSLFTTTTNGGRTYVTKKDTA S ^ lEIATWAKEISASITTPVSÏ'Vl ^ SHNDGTEVINVSQYGYYDGVMTVMM
TVDQKTYSVGDTVKYTITYKNAVNYHGTEKVYQYVIEDTMPSASWDLNEGSYEVTITDGSGNITTLTQGSEKATGSCYN
LAEENNMETlilPWAATNTPTGNTQNGAKdtFFYKGllSITITVTY'TgVLKSGAKBGgaiBPENTNiST.ÏNPNTSNDÜÉGQ
KVTVRDGQITIKKIDGSTKASLQGAIFVLKNATGQFLNFNDTMNVEWGTEANATEYTTGADGIITITGLKEGTYYLVEK
KAPLGYNLLDNSQKVILGDGATDTTNSDNLLVNPTVENNKGTE
A box E containing a conserved glutamic acid residue was also identified in SpbI (underlined), with a glutamic acid residue preserved at residue 423 (bold). The box motif E can be important for the formation of pilus-type oligomeric structures, and thus useful fragments of SpbI can include the conserved glutamic acid residue.
The wild-type SpbI sequence comprises an internal methionine codon (Met-162) which has a TAATGGAGCTGT sequence of 12 monomeric units which comprises the central sequence (underlined) of a Shine-Dalgarno sequence. This Shine-Dalgarno sequence was found to initiate the translation of a truncated SpbI sequence. To prevent initiation of translation at this site, the Shine-Dalgarno sequence may be interrupted in a sequence encoding SpbI used for expression. Although any suitable nucleotide can be mutated to prevent binding to the ribosome, the sequence includes a glycine codon GGA which is part of the central Shine-Dalgarno sequence and is in phase with the internal methionine codon. The third base in this codon can be mutated to C, G or T without modifying the encoded glycine, thus avoiding any modification of the Spb1 sequence. GBS59 (6xD3)
The amino acid sequences of an appropriate number of GBS59 (6xD3) fusion proteins are provided below: SEQ ID NO: 17 (Fusion E)
MGNNPTIENEPKEGIPVDKKITVNKTWAVDGNEVNKADETVDAVFTLQVKDGDKWVNVDSAKATAATSFKHTFENLDNAKTYRVIE RVSGYAPE YVS FVNGWTIKNNKD TENS T PIGSGSGNKPGKKVKEIPVT PSNGEITVS KTWDKGS DLENANWYT LKDGGTAVASV SLTKTTPNGEINLGNGIKFTVTGAFAGKFSGLTDSKTYMISERIAGYGNTITTGAGSAAITNTPDSDNPTPLGSGSGNNPTEESEP QEGTPANQEIKVIKDWAVDGTITDANVAVKAIFTLQEKQTDGTWVNVASHEATKPSRFEHTFTGLDNAKTYRWERVSGYTPEYVS FKNGWTIKNNKNSNDPTPIGSGSGNKPGKDLTELPVTPSKGEVTVAKTWSDGIAPDGVNWYTLKDKDKTVASVSLTKTSKGTID LGNGIKFEVSGNFSGKFTGLENKSYMISERVSGYGSAINLENGKVTITNTKDSDNPTPLGSGSGNKPGTDLSEQPVTPEDGEVKVT KTWAAGANKADAKWYTLKNATKQWASVALTAADTKGTINLGKGMTFEITGAFSGTFKGLQNKAYTVSERVAGYTNAINVTGNAV AITNTPDSDNPTPLGSGSGNNPTTENEPQTGNPVNKEITVRKTWAVDGNEVNKGDEKVDAVFTLQVKDSDKWVNVDSATATAATDF K Y T T FKNL DNAK YRWERVSGYAPAYVS FVGGWTIKNNKN SNDP T PI SEQ ID NO: 18 (Fusion F)
MGNNPTIENEPKEGIPVDKKITVNKTWAVDGNEVNKADETVDAVFTLQVKDGDKWVNVDSAKATAATSFKHTFENLDNAKTYRVIE RVSGYAPEYVSFVNGWTIKNNKDSNEPTPINPSEPKWTYGRKFVKTNKDGKERLAGATFLVKKDGKYLARKSGVATDAEKAAVD STKSALDAAVKAYNDLTKEKQEGQDGKSALATVSEKQKAYNDAFVKANYSYEGSGSGNNPTEESEPQEGTPANQEIKVIKDWAVDG TITDANVAVKAIFTLQEKQTDGTWVNVASHEATKPSRFEHTFTGLDNAKTYRWERVSGYTPEYVSFKNGWTIKNNKNSNDPTPI NPSEPKVVTYGRKFVKTNQANTERLAGATFLVKKEGKYLARKAGAATAEAKAAVKTAKLALDEAVKAYNDLTKEKQEGQEGKTALA TVDQKQKAYNDAFVKANYSYEGSGSGNKPGTDLSEQPVTPEDGEVKVTKTWAAGANKADAKWYTLKNATKQWASVALTAADTKG TINLGKGMTFEITGAFSGTFKGLQNKAYTVSERVAGYTNAINVTGNAVAITNTPDSDNPTPLNPTQPKVETHGKKFVKVGDADARL AGAQFWKNSAGKFLALKEDAAVSGAQTELATAKTDLDNAIKAYNGLTKAQQEGADGTSAKELINTKQSAYDAAFIKARTAYTGSG SGNKPGKDLTELPVTPSKGEVTVAKTWSDGIAPDGVNWYTLKDKDKTVASVSLTKTSKGTIDLGNGIKFEVSGNFSGKFTGLENK SYMISERVSGYGSAINLENGKVTITNTKDSDNPTPLNPTEPKVETHGKKFVKTNEQGDRLAGAQFWKNSAGKYLALKADQSEGQK TLAAKKIALDEAIAAYNKLSATDQKGEKGITAKELIKTKQADYDAAFIEARTAYEGSGSGNKPGKKVKEIPVTPSNGEITVSKTWD KGSDLENANWYTLKDGGTAVASVSLTKTTPNGEINLGNGIKFTVTGAFAGKF SGLTDSKTYMISERIAGYGNTITTGAGSAAITN TPDSDNPTPLNPTEPKWTHGKKFVKTSSTETERLQGAQFWKDSAGKYLALKSSATISAQTTAYTNAKTALDAKIAAYNKLSADD QKGTKGETAKAEIKTAQDAYNAAFIVARTAYEGSGSGNNPTTENEPQTGNPVNKEITVRKTWAVDGNEVNKGDEKVDAVFTLQVKD SDKWVNVDSATATAATDFKYTFKNLDNAKTYRWERVSGYAPAYVSFVGGWTIKNNKNSNDPTPINPSEPKWTYGRKFVKTNQD GSERLAGATFLVKNSQSQYLARKSGVATNEAHKAVTDAKVQLDEAVKAYNKLTKEQQESQDGKAALNLIDEKQTAYNEAFAKANYS YE SEQ ID NO: 19 (Fusion G)
MGNKPGKDLTELPVTPSKGEVTVAKTWSDGIAPDGVNWYTLKDKDKTVASVSLTKTSKGTIDLGNGIKFEVSGNFSGKFTGLENK SYMISERVSGYGSAINLENGKVTITNTKDSDNPTPLNPTEPKVETHGKKFVKTNEQGDRLAGAQFWKNSAGKYLALKADQSEGQK TLAAKKIALDEAIAAYNKLSATDQKGEKGITAKELIKTKQADYDAAFIEARTAYEGSGSGNNPTIENEPKEGIPVDKKITVNKTWA VDGNEVNKADETVDAVFTLQVKDGDKWVNVDSAKATAATSFKHTFENLDNAKTYRVIERVSGYAPEYVSFVNGWTIKNNKDSNEP TPINPSEPKWTYGRKFVKTNKDGKERLAGATFLVKKDGKYLARKSGVATDAEKAAVDSTKSALDAAVKAYNDLTKEKQEGQDGKS ALATVSEKQKAYNDAFVKANYSYEGSGSGNKPGKKVKEIPVTPSNGEITVSKTWDKGSDLENANWYTLKDGGTAVASVSLTKTTP NGEINLGNGIKFTVTGAFAGKFSGLT DSKTYMISERIAGYGNTITTGAGSAAITNT PDS DNPT PLNPTEPKWTHGKKFVKTS STE TERLQGAQFWKDSAGKYLALKSSATISAQTTAYTNAKTALDAKIAAYNKLSADDQKGTKGETAKAEIKTAQDAYNAAFIVARTAY EGSGSGNNPTEESEPQEGTPANQEIKVIKDWAVDGTITDANVAVKAIFTLQEKQTDGTWVNVASHEATKPSRFEHTFTGLDNAKTY RWERV S GY T PE YV S F KN G WTIKNN KN SNDPTPINPSE PKWT Y G RK FVKTN Q AN TERLAGAT FL VKKE GK Y LARKAGAAT AE AK AAVKTAKLALDEAVKAYNDLTKEKQEGQEGKTALATVDQKQKAYNDAFVKANYSYE SEQ ID NO: 20 (Fusion H)
MGNNPTEESEPQEGTPANQEIKVIKDWAVDGTITDANVAVKAIFTLQEKQTDGTWVNVASHEATKPSRFEHTFTGLDNAKTYRWE RVSGYTPEYVSFKNGWTIKNNKNSNDPTPINPSEPKWTYGRKFVKTNQANTERLAGATFLVKKEGKYLARKAGAATAEAKAAVK TAKLAL DEAVKAYN DLTKEKQEGQE GKTALATVD QKQKAYNDAFVKAN YSYEGSGS GNK PGKKVK EIPVTPSNGEITVS KTWDKGS DLENANWYTLKDGGTAVASVSLTKTTPNGEINLGNGIKFTVTGAFAGKFSGLTDSKTYMISERIAGYGNTITTGAGSAAITNTPD
SDNPTPLNPTEPKWTHGKKFVKTSSTETERLQGAQFWKDSAGKYLALKSSATISAQTTAYTNAKTALDAKIAAYNKLSADDQKG
TKGETAKAEIKTAQDAYNAAFIVARTAYEGSGSGNKPGKDLTELPVTPSKGEVTVAKTWSDGIAPDGVNWYTLKDKDKTVASVSL
TKTSKGTIDLGNGIKFEVSGNFSGKFTGLENKSYMISERVSGYGSAINLENGKVTITNTKDSDNPTPLNPTEPKVETHGKKFVKTN
EQGDRLAGAQFWKNSAGKYLALKADQSEGQKTLAAKKIALDEAIAAYNKLSATDQKGEKGITAKELIKTKQADYDAAFIEARTAY
EGSGSGNNPTIENEPKEGIPVDKKITVNKTWAVDGNEVNKADETVDAVFTLQVKDGDKWVNVDSAKATAATSFKHTFENLDNAKTY
RVIERVSGYAPEYVSFVNGWTIKNNKDSNEPTPINPSEPKWTYGRKFVKTNKDGKERLAGATFLVKKDGKYLARKSGVATDAEK
AAVDSTKSALDAAVKAYNDLTKEKQEGQDGKSALATVSEKQKAYNDAFVKANYSYE SEQ ID NO: 21 (Fusion I)
MDGSILADSKAVPVKITLPLWDNGWKDAHVYPKNTETKPQVDKNFADKELDYANNKKDKGTVSASVGDVKKYHVGTKILKGSDY KKLIWTDSMTKGLTFNNDIAVTLDGATLDATNYKLVADDQGFRLVLTDKGLEAVAKAAKTKDVEIKITYSATLNGSAWEVLETND VKLDYGNNPTIENEPKEGIPVDKKITVNKTWAVDGNEVNKADETVDAVFTLQVKDGDKWVNVDSAKATAATSFKHTFENLDNAKTY RVIERVSGYAPEYVSFVNGWTIKNNKDSNE PTPINPSE PKWTYGRKFVKTNKDGKERLAGAT FLVKKDGKYLARKSGVATDAEK AAVDSTKSALDAAVKAYNDLTKEKQEGQDGKSALATVSEKQKAYNDAFVKANYSYEGSGSNGSLLAASKAVPVNITLPLVNEDGW ADAHVYPKNTEEKPEIDKNFAKTNDLTALTDWRLLTAGANYGNYARDKATATAEIGKWPYEVKTKIHKGSKYENLVWTDIMSNG LTMGSTVSLKASGTTETFAKDTDYELSIDARGFTLKFTADGLGKLEKAAKTADIEFTLTYSATVNGQAIIDNPESNDIKLSYGNKP GKDLTELPVTPSKGEVTVAKTWSDGIAPDGVNWYTLKDKDKTVASVSLTKTSKGTIDLGNGIKFEVSGNFSGKFTGLENKSYMIS ERVSGYGSAINLENGKVTITNTKDSDNPTPLNPTEPKVETHGKKFVKTNEQGDRLAGAQFWKNSAGKYLALKADQSEGQKTLAAK KIALDEAIAAYNKLSATDQKGEKGITAKELIKTKQADYDAAFIEARTAYEGSGSNGSILADSKAVPVKITLPLVNNQGWKDAHIY PKNTETKPQVDKNFADKDLDYTDNRKDKGWSATVGDKKEYIVGTKILKGSDYKKLVWTDSMTKGLTFNNNVKVTLDGEDFPVLNY KLVTDDQGFRLALNATGLAAVAAAAKDKDVEIKITYSATVNGSTTVEIPETN DVKLDYGNNPTEESEPQEGTPANQEIKVIKDWAV DGTITDANVAVKAIFTLQEKQTDGTWVNVASHEATKPSRFEHTFTGLDNAKTYRWERVSGYTPEYVSFKNGWTIKNNKNSNDPT PINPSEPKWTYGRKFVKTNQANTERLAGATFLVKKEGKYLARKAGAATAEAKAAVKTAKLALDEAVKAYNDLTKEKQEGQEGKTA LATVDQKQKAYNDAFVKANY SYE Other suitable sequences are proposed in the document WO2011 / 121576. GBS59 (6xD3) -1523
The sequence of GBS59 (6xD3) -1523 is SEQ ID NO: 22 here:
MGNNPTIENEPKEGIPVDKKITWKTWAVDGNEVNKADETVDAVFTLQVKDGDKWVNVDSAKATAATSFKHTFENLDNAKTYRVIE RVSGYAPEYVSFVNGWTIKNNKDSNEPTPIGSGSGNKPGKKVKEIPVTPSNGEITVSKTWDKGSDLENANWYTLKDGGTAVASV SLTKTTPNGEINLGNGIKFTVTGAFAGKFSGLTDSKTYMISERIAGYGNTITTGAGSAAITNTPDSDNPTPLGSGSGNNPTEESEP QEGTPANQEIKVIKDWAVDGTITDANVAVKAIFTLQEKQTDGTWVNVASHEATKPSRFEHTFTGLDNAKTYRWERVSGYTPEYVS FKNGWTIKNNKNSNDPTPIGSGSGNKPGKDLTELPVTPSKGEVTVAKTWSDGIAPDGVNWYTLKDKDKTVASVSLTKTSKGTID LGNGIKFEVSGNFSGKFTGLENKSYMISERVSGYGSAINLENGKVTITNTKDSDNPTPLGSGSGNKPGTDLSEQPVTPEDGEVKVT KTWAAGANKADAKWYTLKNATKQWASVALTAADTKGTINLGKGMTFEITGAFSGTFKGLQNKAYTVSERVAGYTNAINVTGNAV AITNTPDSDNPTPLGSGSGNNPTTENEPQTGNPVNKEITVRKÏWAVDGNEVNKGDEKVDAVFTLQVKDSDKWVNVDSATATAATDF KYTFKNLDNAKTYRWERVSGYAPAYVSFVGGWTIKNNKNSNDPT PIGSGGGGETGTITVQDTQKGAT YKAYKVFDAEIDNANVS DSNKDGASYLIPQGKEAEYKASTDFNSLFTTTTNGGRTYVTKKDTASANEIATWAKSISANTTPVSTVTESNNDGTEVINVSQYGY YYVSSTVNNGAVIMVTSVTPNATIHEKNTDATWGDGGGKTVDQKTYSVGDTVKYTITYKNAVNYHGTEKVYQYVIKDTMPSASWD LNEGSYEVTITDGSGNITTLTQGSEKATGKYNLLEENNNFTITIPWAATNT PTGNTQNGANDDFFYKGINTITVTYTGVLKSGAKP GSADLPENTNIATINPNTSNDDPGQKVTVRDGQITIKKIDGSTKASLQGAIFVLKNATGQFLNFNDTNNVEWGTEANATEYTTGAD GIITITGLKEGTYYLVENDGKKGGYYNWLGNGKGKGYNVDGSKGGYYLVENSGDKGKGYNYVGKGGYYLVEKSKGGYYLVEKSKGKGYN Overview
The term "comprising" includes the terms "including" and "consisting of", for example a composition "comprising" X may consist exclusively of X or may include an additional element, for example, X + Y.
The term "substantially" does not completely exclude, for example, a composition which is "substantially free" of Y can be completely free of Y. If necessary, the term "substantially" can be omitted from the definition of the invention.
In certain applications, the term “comprising” refers to the inclusion of the active agent indicated, for example the polypeptides described, as well as to the inclusion of other active agents, and carriers, excipients, emollients , stabilizers, etc. pharmaceutically acceptable, as known in the pharmaceutical industry. In some implementations, the term "substantially consisting of" refers to a composition the only active ingredient of which is the active ingredient (s) indicated, however, other compounds may be included which are intended to stabilize, conserve, etc. formulation, but are not directly involved in the therapeutic effect of the active ingredient indicated. The use of the transition phrase "substantially constituted" means that the scope of a claim must be interpreted to understand the materials specified or the steps described in the claim, and those which do not materially affect the characteristic (ies) ( s) fundamental (s) and new (s) of the claimed invention. See Herz, 537 F.2d 549, 551-52, 190 USPQ 461, 463 (CCPA 1976) (emphasis in original); see also MPEP § 2111.03. Thus, the term "substantially consisting of" when used in a claim of this invention is not intended to be interpreted as being equivalent to "comprising". The term "consisting of", and its variants include including and limited to, unless expressly stated otherwise. The term "approximately" in relation to a numerical value x means, for example, x + 10%, x + 5%, x + 4%, x + 3%, x + 2%, x + 1%. The term "substantially" does not exclude "completely", for example, a composition which is "substantially free" of Y may be completely free of Y. If necessary, the term "substantially" may be omitted from the definition of invention.
It will be appreciated that the sugar rings can exist in the open form and in the closed form and that, while closed forms are presented in the structural formulas in this document, the open forms are also included in the invention. Similarly, it will be appreciated that sugars can exist in the pyranose and furanose forms and that, while pyranose forms are presented in the structural formulas herein, the furanose forms are also included. Different anomeric forms of sugars are also included.
Unless otherwise specified, a process comprising a step of mixing two or more components does not require a specific mixing order. Thus, the components can be mixed in any order. When there are three components, then two components can be combined with each other, and the combination can then be combined with the third component, etc.
Antibodies will generally be specific to their target. Thus, they will have a greater affinity for the target than for an irrelevant control protein, such as bovine serum albumin.
Unless otherwise specified, the identity between the polypeptide sequences is preferably determined by the Smith-Waterman homology search algorithm as implemented in the MPSRCH (Oxford Molecular) program, using a gap search. refines with the parameters gap opening penalty = 12 and gap extension penalty = 1.
MODES FOR CARRYING OUT THE INVENTION
Bacterial strains and growing conditions.
GB-type IX strain IT-NI-016 (isolated from a case of early-onset neonatal disease) was a courtesy of Alberto Berardi (Policlinico di Modena, Italy), isolated and typed by latex and molecular approaches as part of the DEVANI study (144). The capsular genotype of type IX isolates was confirmed by genome analysis (see below). The strain 2603 V / R (serotype V) was obtained from Dennis Kasper (Harvard Medical School, Boston, MA). CJB111 strain (serotype V) was obtained from Carol Baker (Baylor College of Medicine, Houston, TX). The wild-type GBS strains were grown at 37 ° C in Todd Hewitt broth (Difco Laboratories) or in trypticase soy agar supplemented with 5% sheep blood. The transformed clones carrying the plasmid "pAM-IX" and "pAM-IV-V" were selected (see below) and propagated in the abovementioned medium, adding chloramphenicol (Chl) (10 μg / ml ). For the cloning of the plasmid, competent cells HB101 of E. coli (Promega). Cells were grown at 37 ° C in an orbital shaking incubator (180 rpm) in Luria-Bertani medium (LB, Difco laboratories) or on 15 g / L agar plates (LBA). Chl was used for the selection of positive clones (20 pg / mL).
Genetic modification of GBS types IX, V and VII
A plasmid was designed to obtain the strain expressing the chimeric CPS. A DNA fragment, made up of genes specific for the cps type IX operon (cps9M and cps9I), was amplified by PCR of the genomic DNA of Streptococcus agalactiae IT-NI-016 using specifically designed primers (SEQ ID NO: 23: pAM-IX-F: 'GCGCGCGCCGCGACATATTTGCTCTGATATGCAG'; and SEQ ID NO: 2 4: pAM-IX-R: 'GCG CAGAT CT GATAAT GATAC TAAT CAT CTTC') and the following reaction cycle: 1 'to 98 ° C; 10 '' at 98 ° C, 20 '' at 55 ° C, 3 'at 72 ° C (30 cycles); 7 'at 72 ° C. The resulting fragment (insert cps9M-9I, SEQ ID NO: 43) was digested with NotI / BglII and ligated into the expression vector pAM-p80 (145) (SEQ ID NO: 44) to obtain the plasmid pAM-cps9MI , (cps9M and cps9I; "pAM-IX", SEQ ID NO: 45 - Figure 11). The plasmid of the selected clone HB101 was purified, sequenced, and used to transform 2603 V / R cells or electrocompetent GBS CJB111 cells by electroporation at 1800 V as previously described (146). This configuration results in a strain with a glycosyltransferase repertoire consisting of a single copy of the specific genes of serotype V ps5MOI and of multiple copies of the specific genes of type IX.
DNA fragments made up of specific type V cps (cps5M, cps5O, and cps5I, SEQ ID NO: 40, 41 and 42) were amplified by PCR from genomic DNA of S. agalactiae CJB111, using specifically designed primers:
SEQ ID NO: 25: pAM-V-F GCGGCGCGGCCGCGCTCTGATATGGCAGGAGGTAAGG 3 7
SEQ ID NO: 2 6: pAM-V-R GCGGCAGATCTGGGATAATGATACTAACTTTATCC 35) and the following reaction cycle: 1 min at 98 ° C; 10 s at 98 ° C, 20 s at 55 ° C, and 3 min at 72 ° C (30 cycles); and 7 min at 72 ° C. The resulting fragment was cloned (insert cps5MOI, SEQ ID NO: 53) into the expression vector pAM-p80 (26) to obtain the plasmid pAM-cps5MOI (containing cps5M, cps5O, and cps5I; "pAM-V" SEQ ID NO: 52 - figure 11). The plasmid was purified and used to transform GBS by electroporation. The IT-NI-016 strain (serotype IX) was transformed with pAM-V. The two plasmids were also used to transform the strain CZ-PW-045 serotype VII.
We studied the effect of a variation in the dose of serotype-specific cps genes on the structure of CPS by constructing a new vector where the cps5MOI region was placed downstream of the cps9MI region of pAM-IX. This resulted in a new strain expressing a more balanced chimeric V-IX CPS, in other words PS V-IXb. To do this, a DNA fragment, made up of specific genes of the type V of the cps operon (cps5M, cps5O and cps5I) was amplified by PCR of the genomic DNA of S. agalactiae CJB111 using primers specifically designed ; pAM-V-IX-F (SEQ ID NO: 54): 'GCG CAGAT CTG TAAGAAGAAAAT GATAC C TAAAG TTAT'; and pAM-V-R: (SEQ ID NO: 26): 'GCG CAGAT C T GATAAT GATAC TAAC TTTATCC', and the following reaction cycle: 1 'at 98 ° C; 10 '' at 98 ° C, 20 '' at 55 ° C, 3 'at 72 ° C (30 cycles); 7 'at 72 ° C. The resulting fragment was digested with BglII and ligated into the vector pAM-cps9MI previously generated to obtain the plasmid pAM-cps9MI-cps5MOI, (insert cps9M, cps9I, cps5M, cps5O and cps5I: SEQ ID NO: 56; "pAM-IX -V ”: SEQ ID NO: 55). The plasmid obtained was purified from the selected HB101 clones, sequenced, and used to transform 2603 V / R electrocompetent GBS cells by electroporation at 1800 V, as previously described (146). Serums and reagents based on monoclonal antibodies
Mouse monoclonal antibodies (mAcM) against PS IX and PS V of GBS conjugated to CRM197 were generated by Areta International using standard protocols. Briefly, clones of B cell lymphoma hybridomas from CD1 mouse spleen cells immunized with the respective purified capsular polysaccharide conjugated to CRM197 were isolated. Positive clones were first selected by ELISA and then the culture supernatants were screened for binding to the surface of the related reference strain by flow cytometry. Clones of positive primary hybridomas were subjected to single cell cloning and subcloning by limiting dilution. Monoclonality of a clone was accepted only when the wells of a microtiter plate with growing cells gave a reaction by indirect ELISA after repeated subcloning. The selected mAbs were finally purified by affinity chromatography on protein G. The classes and subclasses of the monoclonal antibodies were determined with the IsoQuick Mouse Monoclonal Isotyping kit (Sigma).
For the immunochemical detection of the chimeric polysaccharide, a fraction of the monoclonal antibodies was biotinylated using the EZ-Link Sulfo-NHS-LC-Biotinylation kit (Thermo Scientific), according to the manufacturer's instructions. The animal treatments were in accordance with Italian laws and were approved by the independent ethics committee (animal care committee) of Novartis Vaccines and Diagnostics, Siena, Italy. CPS serotyping and analysis by flow cytometry
GBS serotyping was carried out by latex agglutination assay using the Strep-B-Latex kit (Statens Serum Institut) according to the manufacturer's instructions. Flow cytometry was performed using anti-capsular polysaccharide antibodies. Bacteria grown in THB to the exponential phase were harvested and fixed in PBS containing 0.1% (w / v) PFA for 1 h at 37 ° C. The fixed cells were washed with PBS and incubated for 1 h at room temperature with mouse immune sera directed against purified type V or type IX polysaccharides, diluted 1/200 in PBS containing 0.1% BSA. Cells were incubated for 1 hour at 23 ° C with anti-mouse goat anti-mouse immunoglobulin G F (ab2) conjugated to R-phycoerythrin, diluted 1/100 in PBS containing 0.1 BSA %. All data was collected using a BD FACS Calibur and a BD FACS CANTO II (BD Bioscience) by acquisition of 10,000 events, and data analysis was performed with Flow-Jo software (v. 8.6, TreeStar Inc.). PS V-IX gives a positive signal indicating that the type V strain (pAM-IX) produces chains of chimeric capsular polysaccharides which contain repeat units specifically recognized by the specific mAbs of type V and of type IX (FIG. 12). The expression in heterologous trans of cps9M and of cps9I allows the assembly by SGB 2603 (V) of capsular polysaccharides reacting with specific antisera of CPS type V and type IX (FIG. 12). The expression in heterologous trans of cps5M, cps5O and cps5I allows the assembly by SGB IT-NI-016 (IX) of capsular polysaccharides reacting with specific antisera of CPS type V and type IX (FIG. 13). Serological confirmation that type V (pAM-IX-V) produces chimeric capsular polysaccharide chains which contain repeat units specifically recognized for type V specific and type IX specific mAbs has been obtained (Figure 17).
DNA sequence analysis of cps capsule biosynthetic batteries For alignment comparisons, nucleotide sequences from the cps serotype specific region of the type V reference strain were retrieved from the database NCBI (2603V / R, access number NC_004116). The specific region of the type IX isolate cps serotype (IT-NI-016) was extracted from the genomic sequence (147). Multiple and pairwise sequence alignments were performed with MUSCLE using Geneious version 7.05 (Biomatters, http: //www.geneious.com/).
Isolation and purification of the chimeric capsular polysaccharide type V-IX
The genetically modified SGB 2603 V / R strain (pAM-IX) was used for the preparation of V-IX chimeric CPS from an 8 L bacterial culture cultivated until the stationary phase in THB with chloramphenicol (10 qg / mL). In order to purify the polysaccharide, the bacterial pellet was collected by centrifugation at 4,000 rpm for 30 minutes, washed in PBS and incubated with 0.8 N NaOH at 37 ° C for 36 hours . After centrifugation at 4,000 rpm for 30 min, 1 M TRIS buffer (1/9 v / v) was added to the supernatant and diluted with 3 N HCl to reach neutral pH. To further purify the chimeric CPS type V-IX, 2 M CaCl 2 (final concentration 0.1 M) and ethanol (final concentration 30% v / v) were added to the solution. After centrifugation at 4,000 rpm for 30 min, the supernatant was subjected to tangential flow filtration with an MW cut-off of 10 kDa (Hydrosart Sartorius, area of 0.2 m2) against 16 volumes of TRIS 50 mM / 500 mM NaCl pH 8.8, and 10 volumes of 10 mM sodium phosphate pH 7.2.
The sample was then concentrated using a rotary evaporator (Rotovapor®, Büchi) and divided into 3 mL aliquots which were separately purified by diffusion exclusion chromatography (SEC) using a packed column S-500 Sephacryl® resin, pre-equilibrated in 100 mM NaPO4 / 1 M NaCl pH 7.2. The chromatographic separation was carried out on a pure ÂKTA system (GE Healthcare) at a flow rate of 0.3 ml / min in 10 mM NaPO4 / 150 mM NaCl pH 7.2. The polysaccharide was detected by measuring the UV absorption at 214 nm, 254 nm, and 280 nm and collected by fraction in the first eluted peak, appearing mainly in the form of a large peak. The polysaccharide solution was subjected to a desalting step on a column packed with Sephadex® G-15 resin (GE Healthcare), in water at a flow rate of 1 ml / min.
To reconstitute a complete N-acetylation of the GlcpNAc and NeupNAc residues which may be present, a 1/1 diluted solution of 4.15 μL / ml of acetic anhydride in ethanol was added to the sample, then the incubation reaction at room temperature for 2 hours. The sample was concentrated using a Rotavapor and injected onto a column packed with Sephadex® of G-15 to purify the re-acetylated polysaccharide. The purity of the polysaccharide preparation was evaluated by colorimetric assays, which indicated a residual protein and nucleic acid content of less than 1% w / w. Highly purified type V, IX and V-IX GBS CPS were obtained by application of a purification process similar to that described above for the chimeric PS V-IX. Immunochemical detection of the sandwich ELISA chimeric polysaccharide
Microtiter wells were coated overnight at 4 ° C with 100 µL of 2.5 µg / mL of each coating mAb in PBS, according to the experimental scheme. To block additional protein binding sites, the wells were treated for 2 h at RT with 350 µL of 3% BSA in PBS. The plates were then incubated for 2 h at 37 ° C with decreasing amounts of polysaccharide according to the experimental design. The specific biotinylated labeling monoclonal antibody diluted 1/100 in PBS / 0.05% Tween (PBST) / 1% BSA was added to the wells, followed by an incubation lasting from 1 h to 37 ° C with stirring. After a thorough washing, the plates were incubated for 45 min with 100 μl of streptavidin conjugated with horseradish peroxidase (Thermo Scientific) diluted to 1/200 in 1% PBST / BSA. After washing, a chromogenic substrate was added to the bound conjugate enzyme, and the absorbance was determined at 450 nm.
Dot blot sandwich
To reveal the chimeric nature of the polysaccharide molecules, we developed a sandwich dot blot in which polysaccharides were captured on a membrane, coated with a specific mAb against native PS V, then revealed with a second bond of l 'MAb to PS IX with great affinity. The results (FIG. 18) demonstrated that the chimeric polysaccharides obtained (PS V-IX and PS V-IXb) were positively revealed by this approach, differently from the native PS V and PS IX, which represented negative controls. These data demonstrate that PS V-IX and PS V-IXb are chimeric capsular polysaccharides (cCPS), consisting of high molecular weight hybrid chains which inherit epitopes characteristic of types V and IX since they are linked by the two serotype-specific mAbs with high affinity and with high specificity.
5 μL points of each coating mAb, concentrated to 0.45 mg / ml in PBS, were deposited on a nitrocellulose membrane, according to the experimental scheme. To block additional protein binding sites, the membrane was incubated overnight at 4 ° C with PBST / 5% blocking reagent (BioRad) with shaking. We cut the membrane to separate the original points of AcM. Each of the resulting nitrocellulose discs was then separated in one of the 12 wells of a cell culture plate (Costar). Each well was filled with 500 μL of specific polysaccharide diluted to 25 μg / ml in PBST / 3% blocking reagent, according to the experimental design (FIG. 18). The plate was incubated for 2 h at RT with moderate shaking. The anti-PS-IX labeling, biotinylated, specific monoclonal antibody, diluted 1/100 in 500 μL of PBST / blocking agent at 3%, was added to each well followed by a 1 h incubation at RT under agitation. After thorough washing, the plate was incubated for 45 min with 500 µL of streptavidin conjugated with horseradish peroxidase (Thermo Scientific) diluted 1/5000 in PBST / 3% blocking agent. The transfer was developed using the SuperSignal® West Pico chemiluminescent substrate (Thermo Scientific) according to the manufacturer's instructions. Competitive ELISA
To measure the binding efficiency of specific CPS mAbs to cCPS, and to obtain a more quantitative estimate of their structural elements, a competitive ELISA has been developed. The results (FIG. 19) confirmed that PS V-IXb binds to type V specific mAbs and to type IX specific mAbs with half the effectiveness of native polysaccharides at the same concentration. Conversely, PS V-IX is capable of binding to 15% type X specific mAbs and to 75% type IX specific mAbs relative to native polysaccharides. These results confirm that the balanced copy number of genes specific for the serotype leads to a balanced epitope ratio in the final cCPS.
Coating with SGB V or IX PS combined with HAS-adh
-1 pg / mL in PBS pH 7.4 (100 pL / well) for V and IX in PBS pH 7.4 (100 pL / well) - Incubation at 4 ° C overnight - washing 3x in buffer wash (0.05% Tween 20 in 1X PBS)
Post-coating - Distribution of 250 pL / well (2% BSA, 0.05% Tween 20 in 1X PBS)
- Incubation for 1.5 h at 37 ° C - Aspiration
Pre-incubation of mAbs with PS
MAb α-CRM-V - dilution of PS in a separate polypropylene microtiter plate (17 dilutions, dilution buffer); - IX: step of 2 times (first dilution in the plate: 25 pg / mL of PS), - V-IX: step of 2 times (first dilution in the plate: 25 μg / mL of PS), - V-IXb : step of 2 times (first dilution in the plate: 25 μg / mL of PS), - V: step of 2 times (first dilution in the plate: 0.3 μg / mL of PS),
MAb α-CRM-IX - dilution of PS in a separate polypropylene microtiter plate (9 dilutions, dilution buffer); - IX: step of 3 times (first dilution in the plate: 0.3 μg / mL of PS), - V-IX: step of 3 times (first dilution in the plate: 0.75 μg / mL of PS), - V-IXb: step of 3 times (first dilution in the plate: 0.75 μg / mL of PS), - V: step of 3 times (first dilution in the plate: 0.75 μg / mL of PS), - A fixed concentration of mAb (equal volume of test PS) was added to each well: 0.03 μg / ml for 12F1 / H8 (α-CRM-V), 0.1 μg / ml for 17B2 / F6 (α-CRM-IX).
- Incubation for 20 min at RT
MAb binding competition - The pre-incubation mixture was transferred to the coated and saturated plate
- Incubation for 1 h at 37 ° C - Washing 3x in washing buffer (Tween 20 at 0.05% in PBS 1X)
Secondary Antibody - 100 µL of a 1/2000 AP-conjugated anti-mouse IgG solution was distributed to each well in 1/2000 dilution buffer.
- Incubation for 1.5 h at 37 ° C - Washing with washing buffer 3x (Tween 20 at 0.05% in PBS 1X)
Addition of substrate - Addition of 100 μL of p-nitrophenylphosphate (p-NPP) at 1.0 mg / ml in a substrate buffer. - Incubation for 30 minutes at room temperature - Addition of 100 pL of 7% EDTA to stop the enzymatic reaction
Plate reading at 405 at 620 nm.
Nuclear magnetic resonance spectroscopy
The 1H NMR experiments were recorded on a Bruker Avance III 400 MHz spectrometer, equipped with a high-precision temperature control device, and using a 5 mm broadband probe (Bruker). TopSpin version 2.6 software (Bruker) was used for data acquisition and processing.
Spectra were collected at 25 or 35 ± 0.1 ° C with 32 k data points over a spectrum width of 10 ppm, accumulating 128 scans. The spectra were weighted with 0.2 Hz line widening and subjected to a Fourier transform. The transmitter was set to the frequency of the water, which was used as the reference signal (4.79 ppm).
All monodimensional proton NMR spectra were obtained quantitatively using a total recycling time to ensure complete recovery of each signal (longitudinal relaxation time 5x T1). To better analyze the differences between the two cCPS obtained (PS V-IX and PS V-IXb), we carried out carbon NMR spectroscopy experiments on chimeric polysaccharides and native polysaccharides.
The 1 H NMR spectrum of PS V-IX is highly similar to that of PS V and PS IX and contains elements which are characteristic of the two capsular polysaccharides. The 1 H NMR spectrum of PS V-IXb has a higher intensity of signature peaks of PS V relative to PSV-IX (Figure 14). The average composition of the repeat units of the two chimeric polysaccharides (PS V-IX and PS V-IXb) was estimated by NMR DEPT. In the region of the spectrum covering approximately 21.5 to 23 ppm, the CH3 carbon atoms of the N-acetyl groups of GlcpNAc and NeupNAc resonate. The chemical shift of the GlcpNAc CH3 branch of PS IX is different from the corresponding shift in the spectrum of PS V (22.55 and 22.61 ppm, respectively). In addition, the signal at 21.8 ppm in the DEPT spectrum of PS IX has been assigned to the GlcpNAc CH3 backbone and is therefore absent from the spectrum of PS V.
Based on these observations, we were able to estimate the relative ratio of the structural elements of PS V to PS IX for the two cCPS, from the integration of the peak areas relative to these CH3 signals.
As this is evident from the superimposition of the enlarged spectra (figure 15), the ratio of the elements of types V and IX is approximately 1/3 in the PS V-IX, is roughly a quarter of the intensity type IX, while the ratio is close to 1/1 in PS V-IXb. These observations suggest that adding a higher dose of cps5 genes likely results in increased activity of serotype V specific glycosyltransferases and, ultimately, a more balanced ratio of the physicochemical elements of PS V to IX relative to PS V-IX. About 75% of the repeat units of the chimeric type V-IX polysaccharide are type IX while the remaining 25% are type V (Figure 15). About 50% of the repeated units of the chimeric type V-IXb polysaccharide are type IX while the remaining 50% are type V (Figure 15).
Conjugate production
Purified chimeric capsular polysaccharides from genetically modified Streptococcus agalactiae serotypes V and IX were conjugated to a carrier protein by periodate oxidation, followed by reductive amination according to the procedures described in reference 2 with certain modifications. CRM197 was used as the carrier protein although the processes are applicable to other carrier proteins such as tetanus toxoid, GBS80, GBS59, GBS59 (6xD3), etc. (1) Oxidation reaction
An oxidation reaction was carried out to generate aldehyde groups at the C8 level of the sialic acid residues by oxidative cleavage of the C8-C9 diol bond. The reaction was carried out by adding a 0.1 M sodium periodate solution to the purified chimeric capsular polysaccharide solution and stirring in the dark for at least 2 hours.
The solution was immediately purified by an ultrafiltration step to remove the formaldehyde and sodium periodate intermediates, for example iodate ions, generated during the reaction. The ultrafiltration was carried out with a tangential flow diafiltration / concentration using regenerated cellulose membranes of UF 30 kD (1 Hydrosart membrane 30kD 0.1 sm) against 13 volumes of 100 mM sodium phosphate buffer pH 7, 2. The 30 kD membrane retained the polysaccharide and the conjugate was recovered from the UF retentate. The oxidized polysaccharide was subjected to 0.2 µm filtration and stored at 2 ° to 8 ° C for no longer than 7 days. (2) Conjugation reaction
The conjugation reaction occurs between certain aldehyde groups generated by the oxidation reaction and certain ε-amino groups of lysines of the carrier protein, by reductive amination in the presence of sodium cyanoborohydride. The periodate treated chimeric capsular polysaccharide was diluted with 100 mM sodium phosphate and CRM197 was concentrated in bulk to obtain a final concentration of 6.35 mg / ml as the concentration of PS.
The target reaction conditions for the CPS-CRM conjugation are: - Polysaccharide / CRM ratio (0.75 / 1 w / w), - Saccharide concentration (6.35 mg / mL) - NaCNBH3 (6.35 mg / mL ).
The polysaccharide / CRM ratio was used to ensure almost complete conversion of the polysaccharide. The reaction was carried out at room temperature (RT) for at least 10 hours, but not more than 28 hours, at pH 7.2 until a conversion of CRM of at least 45% (monitored by an SEC-HPLC test during the process). (3) Dilution of the crude conjugate At the end of the conjugation reaction, water for injection (PPE) was added to obtain a final concentration of sodium phosphate buffer of 35 mM. The product was subjected to 0.2 µm filtration and stored at 2 ° to 8 ° C for no longer than 24 hours when it was not used immediately. (4) Chromatography on hydroxyapatite
The glycoconjugate was separated from the unconjugated CRM by chromatography on hydroxyapatite.
The glycoconjugate was collected in the stream, while the CRM binds to the resin and is removed.
The column was filled with type I hydroxylapatite resin and the purification conditions were: 1) Equilibration: 35 mM sodium phosphate pH = 7.2 (5 column volumes) 2) Loading: 35 mM sodium phosphate pH = 7 , 2 (2.9 column volumes) 3) Extraction: 400 mM sodium phosphate pH = 6.8 (2 column volumes)
The product was subjected to 0.2 µm filtration and stored at 2 ° to 8 ° C for no longer than 24 hours. (5) Extinction reaction
An extinguishing step was used to remove the aldehyde groups from the residual saccharides by reaction with sodium borohydride (NaBH4). The quenching reaction was carried out using a 10 mg / mL sodium borohydride solution at a 25/1 molar excess relative to the estimated oxidized sialic acid (in other words, 20% of the acid total sialic). The reaction was carried out for at least 2 hours while maintaining the pH at 8.3 ± 0.2 by adding 500 mM sodium phosphate. A final 30 kD ultrafiltration was used to remove intermediate and low molecular weight conjugation and quenching reagents and to concentrate it in the range of about 1.0 to 1.5 mg / mL as concentration of saccharide.
Immunization and PS V-IX Provocation Test
A murine GBS challenge model was used to verify the protection efficiency of antigens, as previously described (148). Briefly, groups of eight to sixteen CD-1 female mice (age: 6 to 8 weeks) were immunized with a chimeric polysaccharide conjugate or buffer (PBS) formulated with an alum adjuvant. Protection values were calculated as [(% death in control -% death in vaccine) /% death in control)] x 100
Vaccination of mice with conjugates comprising the chimeric V-IX type capsular polysaccharide protected the mice against challenge with GBS serotype IX, demonstrating that the chimeric polysaccharide conjugate was as effective as the native polysaccharide IX conjugate, wild type. PS V-IXb
The murine challenge model for GBS infection described above was used to verify the protective efficacy of PS V-IXb. Groups of eight to sixteen female CD-1 mice (6 to 8 weeks old) were immunized with the new chimeric polysaccharide conjugate, with non-chimeric PS V or IX, or with a buffer (PBS) formulated with an alum adjuvant . The protection values were calculated as [(% of death in the control -% of death in the vaccine) /% of death in the control)] x 100. As presented in the table below, the vaccination mice with the conjugates comprising PS V-IXb protected the mice against the challenge test with GBS serotype IX and V, demonstrating that this new chimeric polysaccharide conjugate was effective against the strains of the two serotypes contained in the chimera .
Primers and vectors for the production of chimeric polysaccharides Ia-Ib-III in a context of serotype Ia
Three plasmids were designed to obtain a “divalent” chimeric Ia-III polysaccharide and a strain expressing “trivalent” chimeric Ia-Ib-III CPS. DNA fragments, made up of genes specific for the cps operon type Ia, Ib and III (cps laH, cpslbJ, cpslbK and cps3H) were amplified by PCR from the genomic DNA of S. agalactiae using specifically designed sense and antisense primers:
The following reaction cycle was used: 1 'at 98 ° C; 10 '' at 98 ° C, 20 '' at 55 ° C, 3 'at 72 ° C (30 cycles); 7 'at 72 ° C.
The resulting fragments were ligated (insert cps3H-cps1bJ-cps1bK, SEQ ID NO: 49; insert cps3H-cps1bj, SEQ 5 ID NO: 51; insert cps3H-cps1aH, SEQ ID NO: 47) in the expression vector pAM -p80 (145) (SEQ ID NO: 44) to obtain the plasmids pAM-Tris-L (SEQ ID NO: 48), pAM-Tris-S (SEQ ID NO: 50) and pAM-III-Ia-cpsH ( SEQ ID NO: 46). Plasmids were purified from a selected clone, sequenced, and used to transform electrocompetent GBS serotype Ia cells (strain 090) by electroporation at 1,800 V as previously described (146). The vectors are shown in Figure 16. Cells transformed with pAM-Tris-L or pAM-Tris-S produce a chimeric polysaccharide comprising repeat units of serotypes Ia, Ib and III. Cells transformed with pAM-III-Ia-cpsH produce a chimeric polysaccharide comprising a repeat unit of serotypes Ia and III. Representative sequences of cps1aH, cps3H, cps1bJ, cps1bK are proposed in SEQ ID NO: 36, 37, 38 and 39 respectively.
While certain embodiments of the present invention have been described and are specifically illustrated above, the invention is not intended to be limited to these embodiments. Various modifications may be made thereto without departing from the scope and spirit of the present invention as set out in the following claims.
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权利要求:
Claims (15)
[1]
1. Conjugate comprising (i) a capsular polysaccharide, and (ii) a carrier protein characterized in that the capsular polysaccharide is a chimeric polysaccharide which comprises, (a) at least one repeat unit of a first serotype of Streptococcus capsular polysaccharide agalactiae (GBS) and at least one repeat unit of a second serotype of Streptococcus agalactiae capsular polysaccharide (GBS) in which the repeat units are joined by a glycosidic bond.
[2]
2. Conjugate according to claim 1, in which the capsular polysaccharide further comprises at least one repeated unit of a third serotype of GBS capsular polysaccharide.
[3]
3. Conjugate according to claim 1 or 2, in which the first serotype of GBS capsular polysaccharide is type Ia and the second serotype of GBS capsular polysaccharide is type Ib.
[4]
4. Conjugate according to claim 3, when it depends on claim 2, in which the third serotype of GBS capsular polysaccharide is type III.
[5]
5. Conjugate according to claim 1 or 2, in which the first serotype of GBS capsular polysaccharide is type V and the second serotype of GBS capsular polysaccharide is type IX.
[6]
6. Conjugate according to claim 5, when it depends on claim 2, in which the third serotype of GBS capsular polysaccharide is type VII.
[7]
7. Conjugate according to claim 1, in which the ratio of the repeated units of the first and second serotypes of GBS capsular polysaccharides is 1/1 and / or of the first, second and third serotypes of GBS capsular polysaccharides is 1/1/1.
[8]
8. Conjugate according to any one of claims 1 to 7, in which the carrier protein is covalently linked to the capsular polysaccharide.
[9]
9. The conjugate of claim 8, wherein the carrier protein is covalently linked to the capsular polysaccharide.
[10]
10. Conjugate according to claim 9, in which the linker is adipic acid dihydrazide.
[11]
11. Conjugate according to any one of claims 8 to 10, in which the carrier protein is selected from the group consisting of tetanus toxoid, diphtheria toxoid, CRM197, GBS80, GBS67 and GBS59.
[12]
12. A pharmaceutical composition comprising the conjugate according to any one of claims 8 to 11, in an amount effective for preventing systemic infections in an animal in which said systemic infections are caused by group B streptococcus and a diluent, carrier or excipient pharmaceutically acceptable.
[13]
13. The pharmaceutical composition according to claim 12, wherein the composition is a vaccine.
[14]
14. A pharmaceutical composition according to claim 13, wherein the vaccine is intended to be administered to human beings selected from women of reproductive age, pregnant women and elderly patients.
[15]
15. Pharmaceutical composition according to any one of claims 12 to 14, in which the composition is intended for the prevention and / or treatment of a disease caused by S. agalactiae, in particular in which the disease is neonatal sepsis, bacteremia, neonatal pneumonia, neonatal meningitis, endometritis, osteomyelitis or septic arthritis.

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GB0502095D0|2005-02-01|2005-03-09|Chiron Srl|Conjugation of streptococcal capsular saccharides|

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WO2022043855A1|2020-08-26|2022-03-03|Pfizer Inc.|Group b streptococcus polysaccharide-protein conjugates, methods for producing conjugates, immunogenic compositions comprising conjugates, and uses thereof|

法律状态:
2018-02-22| FG| Patent granted|Effective date: 20180115 |

优先权:

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申请号 | 申请日 | 专利标题

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EP15020110|2015-07-01|

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EP15020110.1|2015-07-01|

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EP15193288|2015-11-05|

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